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Protein

40S ribosomal protein S15-4

Gene

RPS15D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: InterPro
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15-4
Gene namesi
Name:RPS15D
Ordered Locus Names:At5g09510
ORF Names:T5E8_310
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G09510
TAIRilocus:2184772 AT5G09510

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001300421 – 15240S ribosomal protein S15-4Add BLAST152

Proteomic databases

PaxDbiQ9FY64
PRIDEiQ9FY64

Expressioni

Gene expression databases

ExpressionAtlasiQ9FY64 baseline and differential
GenevisibleiQ9FY64 AT

Interactioni

Protein-protein interaction databases

BioGridi16088, 3 interactors
IntActiQ9FY64, 1 interactor
STRINGi3702.AT5G09510.1

Structurei

3D structure databases

ProteinModelPortaliQ9FY64
SMRiQ9FY64
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0898 Eukaryota
COG0185 LUCA
HOGENOMiHOG000111561
InParanoidiQ9FY64
KOiK02958
OMAiVIRTHCR
OrthoDBiEOG09360RD8
PhylomeDBiQ9FY64

Family and domain databases

Gene3Di3.30.860.20, 1 hit
HAMAPiMF_00531 Ribosomal_S19, 1 hit
InterProiView protein in InterPro
IPR002222 Ribosomal_S19
IPR020934 Ribosomal_S19_CS
IPR023575 Ribosomal_S19_SF
IPR005713 Ribosomal_S19A/S15e
PANTHERiPTHR11880 PTHR11880, 1 hit
PfamiView protein in Pfam
PF00203 Ribosomal_S19, 1 hit
PIRSFiPIRSF002144 Ribosomal_S19, 1 hit
PRINTSiPR00975 RIBOSOMALS19
SUPFAMiSSF54570 SSF54570, 1 hit
TIGRFAMsiTIGR01025 uS19_arch, 1 hit
PROSITEiView protein in PROSITE
PS00323 RIBOSOMAL_S19, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9FY64-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MADVEPEVAA AGVPKKRTFK KFAFKGVDLD ALLDMSTDDL VKLFSSRIRR
60 70 80 90 100
RFSRGLTRKP MALIKKLRKA KREAPAGEKP EPVRTHLRNM IIVPEMIGSI
110 120 130 140 150
IGVYNGKTFN QVEIKPEMIG HYLAEFSISY KPVKHGRPGV GATHSSRFIP

LK
Length:152
Mass (Da):17,072
Last modified:March 1, 2001 - v1
Checksum:iB3284734268040F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL391712 Genomic DNA Translation: CAC05477.1
CP002688 Genomic DNA Translation: AED91404.1
AY050966 mRNA Translation: AAK93643.1
AY096616 mRNA Translation: AAM20266.1
AY085630 mRNA Translation: AAM62851.1
RefSeqiNP_196513.1, NM_120988.3 [Q9FY64-1]
UniGeneiAt.10062

Genome annotation databases

EnsemblPlantsiAT5G09510.1; AT5G09510.1; AT5G09510 [Q9FY64-1]
GeneIDi830810
GrameneiAT5G09510.1; AT5G09510.1; AT5G09510 [Q9FY64-1]
KEGGiath:AT5G09510

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiRS154_ARATH
AccessioniPrimary (citable) accession number: Q9FY64
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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