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Protein

Putative pentatricopeptide repeat-containing protein At1g56570

Gene

PCMP-E64

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • defense response to fungus Source: TAIR
  • response to abscisic acid Source: TAIR
  • response to glucose Source: TAIR
  • response to salt stress Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At1g56570
Gene namesi
Name:PCMP-E64
Ordered Locus Names:At1g56570
ORF Names:F25P12.98
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G56570.

Subcellular locationi

GO - Cellular componenti

  • mitochondrion Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428241 – 611Putative pentatricopeptide repeat-containing protein At1g56570Add BLAST611

Proteomic databases

PaxDbiQ9FXA9.
PRIDEiQ9FXA9.

PTM databases

iPTMnetiQ9FXA9.

Expressioni

Gene expression databases

GenevisibleiQ9FXA9. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G56570.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FXA9.
SMRiQ9FXA9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati44 – 74PPR 1Add BLAST31
Repeati75 – 109PPR 2Add BLAST35
Repeati110 – 144PPR 3Add BLAST35
Repeati145 – 176PPR 4Add BLAST32
Repeati177 – 211PPR 5Add BLAST35
Repeati212 – 246PPR 6Add BLAST35
Repeati247 – 281PPR 7Add BLAST35
Repeati282 – 311PPR 8Add BLAST30
Repeati312 – 346PPR 9Add BLAST35
Repeati347 – 377PPR 10Add BLAST31
Repeati379 – 413PPR 11Add BLAST35
Repeati414 – 444PPR 12Add BLAST31
Repeati450 – 480PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni485 – 561Type E motifAdd BLAST77
Regioni562 – 592Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 13 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237570.
InParanoidiQ9FXA9.
OMAiMMIGYGS.
OrthoDBiEOG093608SO.
PhylomeDBiQ9FXA9.

Family and domain databases

Gene3Di1.25.40.10. 5 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FXA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSITKLARSN AFKPIPNFVR SSLRNAGVES SQNTEYPPYK PKKHHILATN
60 70 80 90 100
LIVSYFEKGL VEEARSLFDE MPDRDVVAWT AMITGYASSN YNARAWECFH
110 120 130 140 150
EMVKQGTSPN EFTLSSVLKS CRNMKVLAYG ALVHGVVVKL GMEGSLYVDN
160 170 180 190 200
AMMNMYATCS VTMEAACLIF RDIKVKNDVT WTTLITGFTH LGDGIGGLKM
210 220 230 240 250
YKQMLLENAE VTPYCITIAV RASASIDSVT TGKQIHASVI KRGFQSNLPV
260 270 280 290 300
MNSILDLYCR CGYLSEAKHY FHEMEDKDLI TWNTLISELE RSDSSEALLM
310 320 330 340 350
FQRFESQGFV PNCYTFTSLV AACANIAALN CGQQLHGRIF RRGFNKNVEL
360 370 380 390 400
ANALIDMYAK CGNIPDSQRV FGEIVDRRNL VSWTSMMIGY GSHGYGAEAV
410 420 430 440 450
ELFDKMVSSG IRPDRIVFMA VLSACRHAGL VEKGLKYFNV MESEYGINPD
460 470 480 490 500
RDIYNCVVDL LGRAGKIGEA YELVERMPFK PDESTWGAIL GACKAHKHNG
510 520 530 540 550
LISRLAARKV MELKPKMVGT YVMLSYIYAA EGKWVDFARV RKMMRMMGNK
560 570 580 590 600
KEAGMSWILV ENQVFSFAVS DKMCPNASSV YSVLGLLIEE TREAGYVPEL
610
DSLVNDQEVG T
Length:611
Mass (Da):68,278
Last modified:March 1, 2001 - v1
Checksum:iCFBCFD3B12133168
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009323 Genomic DNA. Translation: AAG09106.1.
CP002684 Genomic DNA. Translation: AEE33410.1.
PIRiD96607.
RefSeqiNP_176050.1. NM_104534.2.

Genome annotation databases

EnsemblPlantsiAT1G56570.1; AT1G56570.1; AT1G56570.
GeneIDi842111.
GrameneiAT1G56570.1; AT1G56570.1; AT1G56570.
KEGGiath:AT1G56570.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009323 Genomic DNA. Translation: AAG09106.1.
CP002684 Genomic DNA. Translation: AEE33410.1.
PIRiD96607.
RefSeqiNP_176050.1. NM_104534.2.

3D structure databases

ProteinModelPortaliQ9FXA9.
SMRiQ9FXA9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G56570.1.

PTM databases

iPTMnetiQ9FXA9.

Proteomic databases

PaxDbiQ9FXA9.
PRIDEiQ9FXA9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G56570.1; AT1G56570.1; AT1G56570.
GeneIDi842111.
GrameneiAT1G56570.1; AT1G56570.1; AT1G56570.
KEGGiath:AT1G56570.

Organism-specific databases

TAIRiAT1G56570.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237570.
InParanoidiQ9FXA9.
OMAiMMIGYGS.
OrthoDBiEOG093608SO.
PhylomeDBiQ9FXA9.

Miscellaneous databases

PROiQ9FXA9.

Gene expression databases

GenevisibleiQ9FXA9. AT.

Family and domain databases

Gene3Di1.25.40.10. 5 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPPR83_ARATH
AccessioniPrimary (citable) accession number: Q9FXA9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.