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Protein

Putative pentatricopeptide repeat-containing protein At1g56570

Gene

PCMP-E64

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • defense response to fungus Source: TAIR
  • mitochondrial mRNA modification Source: GO_Central
  • response to abscisic acid Source: TAIR
  • response to glucose Source: TAIR
  • response to salt stress Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At1g56570
Gene namesi
Name:PCMP-E64
Ordered Locus Names:At1g56570
ORF Names:F25P12.98
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G56570
TAIRilocus:2027589 AT1G56570

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428241 – 611Putative pentatricopeptide repeat-containing protein At1g56570Add BLAST611

Proteomic databases

PaxDbiQ9FXA9
PRIDEiQ9FXA9

PTM databases

iPTMnetiQ9FXA9

Expressioni

Gene expression databases

ExpressionAtlasiQ9FXA9 baseline and differential
GenevisibleiQ9FXA9 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G56570.1

Structurei

3D structure databases

ProteinModelPortaliQ9FXA9
SMRiQ9FXA9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati44 – 74PPR 1Add BLAST31
Repeati75 – 109PPR 2Add BLAST35
Repeati110 – 144PPR 3Add BLAST35
Repeati145 – 176PPR 4Add BLAST32
Repeati177 – 211PPR 5Add BLAST35
Repeati212 – 246PPR 6Add BLAST35
Repeati247 – 281PPR 7Add BLAST35
Repeati282 – 311PPR 8Add BLAST30
Repeati312 – 346PPR 9Add BLAST35
Repeati347 – 377PPR 10Add BLAST31
Repeati379 – 413PPR 11Add BLAST35
Repeati414 – 444PPR 12Add BLAST31
Repeati450 – 480PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni485 – 561Type E motifAdd BLAST77
Regioni562 – 592Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9FXA9
OMAiPRMVGTY
OrthoDBiEOG093608SO
PhylomeDBiQ9FXA9

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 5 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Q9FXA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSITKLARSN AFKPIPNFVR SSLRNAGVES SQNTEYPPYK PKKHHILATN
60 70 80 90 100
LIVSYFEKGL VEEARSLFDE MPDRDVVAWT AMITGYASSN YNARAWECFH
110 120 130 140 150
EMVKQGTSPN EFTLSSVLKS CRNMKVLAYG ALVHGVVVKL GMEGSLYVDN
160 170 180 190 200
AMMNMYATCS VTMEAACLIF RDIKVKNDVT WTTLITGFTH LGDGIGGLKM
210 220 230 240 250
YKQMLLENAE VTPYCITIAV RASASIDSVT TGKQIHASVI KRGFQSNLPV
260 270 280 290 300
MNSILDLYCR CGYLSEAKHY FHEMEDKDLI TWNTLISELE RSDSSEALLM
310 320 330 340 350
FQRFESQGFV PNCYTFTSLV AACANIAALN CGQQLHGRIF RRGFNKNVEL
360 370 380 390 400
ANALIDMYAK CGNIPDSQRV FGEIVDRRNL VSWTSMMIGY GSHGYGAEAV
410 420 430 440 450
ELFDKMVSSG IRPDRIVFMA VLSACRHAGL VEKGLKYFNV MESEYGINPD
460 470 480 490 500
RDIYNCVVDL LGRAGKIGEA YELVERMPFK PDESTWGAIL GACKAHKHNG
510 520 530 540 550
LISRLAARKV MELKPKMVGT YVMLSYIYAA EGKWVDFARV RKMMRMMGNK
560 570 580 590 600
KEAGMSWILV ENQVFSFAVS DKMCPNASSV YSVLGLLIEE TREAGYVPEL
610
DSLVNDQEVG T
Length:611
Mass (Da):68,278
Last modified:March 1, 2001 - v1
Checksum:iCFBCFD3B12133168
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009323 Genomic DNA Translation: AAG09106.1
CP002684 Genomic DNA Translation: AEE33410.1
CP002684 Genomic DNA Translation: ANM60848.1
PIRiD96607
RefSeqiNP_001319256.1, NM_001333790.1
NP_176050.1, NM_104534.2

Genome annotation databases

EnsemblPlantsiAT1G56570.1; AT1G56570.1; AT1G56570
AT1G56570.2; AT1G56570.2; AT1G56570
GeneIDi842111
GrameneiAT1G56570.1; AT1G56570.1; AT1G56570
AT1G56570.2; AT1G56570.2; AT1G56570
KEGGiath:AT1G56570

Similar proteinsi

Entry informationi

Entry nameiPPR83_ARATH
AccessioniPrimary (citable) accession number: Q9FXA9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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