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Protein

B3 domain-containing protein At1g16640

Gene

At1g16640

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi7 – 10094TF-B3PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
B3 domain-containing protein At1g16640
Gene namesi
Ordered Locus Names:At1g16640
ORF Names:F19K19.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G16640.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 134134B3 domain-containing protein At1g16640PRO_0000111530Add
BLAST

Proteomic databases

PaxDbiQ9FX77.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FX77. baseline and differential.
GenevisibleiQ9FX77. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G16640.1.

Structurei

Secondary structure

1
134
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 126Combined sources
Helixi15 – 184Combined sources
Helixi26 – 294Combined sources
Beta strandi38 – 447Combined sources
Beta strandi49 – 579Combined sources
Beta strandi60 – 634Combined sources
Helixi67 – 748Combined sources
Beta strandi81 – 866Combined sources
Beta strandi88 – 9710Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YELNMR-A1-102[»]
ProteinModelPortaliQ9FX77.
SMRiQ9FX77. Positions 1-102.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9FX77.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi122 – 1254Poly-Glu

Sequence similaritiesi

Contains 1 TF-B3 DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JW62. Eukaryota.
ENOG411058H. LUCA.
HOGENOMiHOG000097068.
InParanoidiQ9FX77.
OMAiGWENFVK.
PhylomeDBiQ9FX77.

Family and domain databases

Gene3Di2.40.330.10. 1 hit.
InterProiIPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel.
[Graphical view]
PfamiPF02362. B3. 1 hit.
[Graphical view]
SMARTiSM01019. B3. 1 hit.
[Graphical view]
SUPFAMiSSF101936. SSF101936. 1 hit.
PROSITEiPS50863. B3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FX77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADTGEVQFM KPFISEKSSK SLEIPLGFNE YFPAPFPITV DLLDYSGRSW
60 70 80 90 100
TVRMKKRGEK VFLTVGWENF VKDNNLEDGK YLQFIYDRDR TFYVIIYGHN
110 120 130
MCSEYRDFPQ VAVEVDDYEN GEEEEDGDDQ DKHQ
Length:134
Mass (Da):15,792
Last modified:March 1, 2001 - v1
Checksum:i146A087FF9E62C92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011808 Genomic DNA. Translation: AAG10819.1.
CP002684 Genomic DNA. Translation: AEE29479.1.
BT012511 mRNA. Translation: AAS99655.1.
BT014811 mRNA. Translation: AAT41794.1.
PIRiE86301.
RefSeqiNP_173109.1. NM_101525.3.
UniGeneiAt.41877.

Genome annotation databases

EnsemblPlantsiAT1G16640.1; AT1G16640.1; AT1G16640.
GeneIDi838233.
GrameneiAT1G16640.1; AT1G16640.1; AT1G16640.
KEGGiath:AT1G16640.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011808 Genomic DNA. Translation: AAG10819.1.
CP002684 Genomic DNA. Translation: AEE29479.1.
BT012511 mRNA. Translation: AAS99655.1.
BT014811 mRNA. Translation: AAT41794.1.
PIRiE86301.
RefSeqiNP_173109.1. NM_101525.3.
UniGeneiAt.41877.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YELNMR-A1-102[»]
ProteinModelPortaliQ9FX77.
SMRiQ9FX77. Positions 1-102.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G16640.1.

Proteomic databases

PaxDbiQ9FX77.

Protocols and materials databases

DNASUi838233.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G16640.1; AT1G16640.1; AT1G16640.
GeneIDi838233.
GrameneiAT1G16640.1; AT1G16640.1; AT1G16640.
KEGGiath:AT1G16640.

Organism-specific databases

TAIRiAT1G16640.

Phylogenomic databases

eggNOGiENOG410JW62. Eukaryota.
ENOG411058H. LUCA.
HOGENOMiHOG000097068.
InParanoidiQ9FX77.
OMAiGWENFVK.
PhylomeDBiQ9FX77.

Miscellaneous databases

EvolutionaryTraceiQ9FX77.
PROiQ9FX77.

Gene expression databases

ExpressionAtlasiQ9FX77. baseline and differential.
GenevisibleiQ9FX77. AT.

Family and domain databases

Gene3Di2.40.330.10. 1 hit.
InterProiIPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel.
[Graphical view]
PfamiPF02362. B3. 1 hit.
[Graphical view]
SMARTiSM01019. B3. 1 hit.
[Graphical view]
SUPFAMiSSF101936. SSF101936. 1 hit.
PROSITEiPS50863. B3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis cDNA clones."
    Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. Cited for: GENE FAMILY.
  5. "Structure of the B3 domain from Arabidopsis thaliana protein At1g16640."
    Waltner J.K., Peterson F.C., Lytle B.L., Volkman B.F.
    Protein Sci. 14:2478-2483(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 1-102.

Entry informationi

Entry nameiY1664_ARATH
AccessioniPrimary (citable) accession number: Q9FX77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: March 1, 2001
Last modified: February 17, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

Putative DNA-binding elements conserved in B3 domains from the RAV, ARF and ABI3/VP1 subfamilies are largely absent in At1g16640, suggesting that B3 domains could function in contexts other than transcriptional regulation.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.