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Protein

Pentatricopeptide repeat-containing protein At3g02330, mitochondrial

Gene

PCMP-E90

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in C-to-U editing of mitochondrial RNA. Required for RNA editing at 8 sites in 6 different mRNAs in mitochondria.1 Publication

GO - Molecular functioni

GO - Biological processi

  • cytidine to uridine editing Source: TAIR
  • mitochondrial mRNA modification Source: TAIR
  • mRNA processing Source: UniProtKB-KW

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g02330, mitochondrial
Alternative name(s):
Mitochondrial editing factor 131 Publication
Gene namesi
Name:PCMP-E90
Synonyms:MEF131 Publication
Ordered Locus Names:At3g02330
ORF Names:F11A12.2, F14P3.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G02330.
TAIRilocus:2074562. AT3G02330.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Disruption phenotypei

Retarded growth, reduced size of leaves and length of petioles.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 31MitochondrionSequence analysisAdd BLAST31
ChainiPRO_000035606632 – 903Pentatricopeptide repeat-containing protein At3g02330, mitochondrialAdd BLAST872

Proteomic databases

PaxDbiQ9FWA6.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FWA6. baseline and differential.
GenevisibleiQ9FWA6. AT.

Interactioni

Subunit structurei

Interacts with MORF1/RIP8.1 Publication

Protein-protein interaction databases

BioGridi6448. 2 interactors.
STRINGi3702.AT3G02330.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FWA6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati47 – 81PPR 1Add BLAST35
Repeati82 – 112PPR 2Add BLAST31
Repeati113 – 143PPR 3Add BLAST31
Repeati144 – 178PPR 4Add BLAST35
Repeati179 – 213PPR 5Add BLAST35
Repeati214 – 244PPR 6Add BLAST31
Repeati245 – 279PPR 7Add BLAST35
Repeati280 – 314PPR 8Add BLAST35
Repeati346 – 380PPR 9Add BLAST35
Repeati381 – 415PPR 10Add BLAST35
Repeati416 – 446PPR 11Add BLAST31
Repeati447 – 481PPR 12Add BLAST35
Repeati482 – 515PPR 13Add BLAST34
Repeati516 – 550PPR 14Add BLAST35
Repeati567 – 601PPR 15Add BLAST35
Repeati602 – 636PPR 16Add BLAST35
Repeati637 – 667PPR 17Add BLAST31
Repeati668 – 702PPR 18Add BLAST35
Repeati703 – 738PPR 19Add BLAST36
Repeati739 – 769PPR 20Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni774 – 850Type E motifAdd BLAST77
Regioni851 – 881Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000084920.
InParanoidiQ9FWA6.
OMAiFRSCAAM.
OrthoDBiEOG093607E0.
PhylomeDBiQ9FWA6.

Family and domain databases

Gene3Di1.25.40.10. 6 hits.
InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom_sf.
PfamiView protein in Pfam
PF01535. PPR. 8 hits.
PF13041. PPR_2. 4 hits.
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiView protein in PROSITE
PS51375. PPR. 21 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FWA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAESLRLLHM TRSVVSFNRC LTEKISYRRV PSFSYFTDFL NQVNSVSTTN
60 70 80 90 100
FSFVFKECAK QGALELGKQA HAHMIISGFR PTTFVLNCLL QVYTNSRDFV
110 120 130 140 150
SASMVFDKMP LRDVVSWNKM INGYSKSNDM FKANSFFNMM PVRDVVSWNS
160 170 180 190 200
MLSGYLQNGE SLKSIEVFVD MGREGIEFDG RTFAIILKVC SFLEDTSLGM
210 220 230 240 250
QIHGIVVRVG CDTDVVAASA LLDMYAKGKR FVESLRVFQG IPEKNSVSWS
260 270 280 290 300
AIIAGCVQNN LLSLALKFFK EMQKVNAGVS QSIYASVLRS CAALSELRLG
310 320 330 340 350
GQLHAHALKS DFAADGIVRT ATLDMYAKCD NMQDAQILFD NSENLNRQSY
360 370 380 390 400
NAMITGYSQE EHGFKALLLF HRLMSSGLGF DEISLSGVFR ACALVKGLSE
410 420 430 440 450
GLQIYGLAIK SSLSLDVCVA NAAIDMYGKC QALAEAFRVF DEMRRRDAVS
460 470 480 490 500
WNAIIAAHEQ NGKGYETLFL FVSMLRSRIE PDEFTFGSIL KACTGGSLGY
510 520 530 540 550
GMEIHSSIVK SGMASNSSVG CSLIDMYSKC GMIEEAEKIH SRFFQRANVS
560 570 580 590 600
GTMEELEKMH NKRLQEMCVS WNSIISGYVM KEQSEDAQML FTRMMEMGIT
610 620 630 640 650
PDKFTYATVL DTCANLASAG LGKQIHAQVI KKELQSDVYI CSTLVDMYSK
660 670 680 690 700
CGDLHDSRLM FEKSLRRDFV TWNAMICGYA HHGKGEEAIQ LFERMILENI
710 720 730 740 750
KPNHVTFISI LRACAHMGLI DKGLEYFYMM KRDYGLDPQL PHYSNMVDIL
760 770 780 790 800
GKSGKVKRAL ELIREMPFEA DDVIWRTLLG VCTIHRNNVE VAEEATAALL
810 820 830 840 850
RLDPQDSSAY TLLSNVYADA GMWEKVSDLR RNMRGFKLKK EPGCSWVELK
860 870 880 890 900
DELHVFLVGD KAHPRWEEIY EELGLIYSEM KPFDDSSFVR GVEVEEEDQW

CYC
Length:903
Mass (Da):101,714
Last modified:December 16, 2008 - v2
Checksum:i7B8BC705649AD933
GO

Sequence cautioni

The sequence AAF02108 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAG12601 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009755 Genomic DNA. Translation: AAF02108.1. Sequence problems.
AC068900 Genomic DNA. Translation: AAG12601.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE73793.1.
RefSeqiNP_186882.2. NM_111100.3.
UniGeneiAt.53158.

Genome annotation databases

EnsemblPlantsiAT3G02330.1; AT3G02330.1; AT3G02330.
GeneIDi821115.
GrameneiAT3G02330.1; AT3G02330.1; AT3G02330.
KEGGiath:AT3G02330.

Similar proteinsi

Entry informationi

Entry nameiPP207_ARATH
AccessioniPrimary (citable) accession number: Q9FWA6
Secondary accession number(s): Q9SRU8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: February 28, 2018
This is version 95 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome