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Q9FUZ0

- DEF1A_SOLLC

UniProt

Q9FUZ0 - DEF1A_SOLLC

Protein

Peptide deformylase 1A, chloroplastic

Gene

PDF1A

Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (01 Mar 2001)
      Previous versions | rss
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    Functioni

    Removes the formyl group from the N-terminal Met of newly synthesized proteins.By similarity

    Catalytic activityi

    Formyl-L-methionyl peptide + H2O = formate + methionyl peptide.

    Cofactori

    Binds 1 Zinc ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi196 – 1961ZincBy similarity
    Metal bindingi238 – 2381ZincBy similarity
    Active sitei239 – 2391By similarity
    Metal bindingi242 – 2421ZincBy similarity

    GO - Molecular functioni

    1. iron ion binding Source: InterPro
    2. peptide deformylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. co-translational protein modification Source: EnsemblPlants/Gramene
    2. translation Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    SABIO-RKQ9FUZ0.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Peptide deformylase 1A, chloroplastic (EC:3.5.1.88)
    Short name:
    PDF 1A
    Alternative name(s):
    Polypeptide deformylase
    Gene namesi
    Name:PDF1A
    OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
    Taxonomic identifieri4081 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
    ProteomesiUP000004994: Chromosome 7

    Subcellular locationi

    Plastidchloroplast stroma By similarity

    GO - Cellular componenti

    1. chloroplast stroma Source: UniProtKB-SubCell
    2. plant-type cell wall Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini? – 277Peptide deformylase 1A, chloroplasticPRO_0000006731
    Transit peptidei1 – ?ChloroplastSequence Analysis

    Structurei

    3D structure databases

    ProteinModelPortaliQ9FUZ0.
    SMRiQ9FUZ0. Positions 88-275.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the polypeptide deformylase family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    KOiK01462.
    OMAiKAQDRRP.

    Family and domain databases

    Gene3Di3.90.45.10. 1 hit.
    HAMAPiMF_00163. Pep_deformylase.
    InterProiIPR000181. Fmet_deformylase.
    IPR023635. Peptide_deformylase.
    [Graphical view]
    PANTHERiPTHR10458. PTHR10458. 1 hit.
    PfamiPF01327. Pep_deformylase. 1 hit.
    [Graphical view]
    PRINTSiPR01576. PDEFORMYLASE.
    SUPFAMiSSF56420. SSF56420. 1 hit.
    TIGRFAMsiTIGR00079. pept_deformyl. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9FUZ0-1 [UniParc]FASTAAdd to Basket

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    MMERFPRLAQ RVLSVPFTPK YLKSCKKTNP LTSHLMQLRG SQRPIFIQWN    50
    LQGRPSVCTD LISKKNYSSA TARAGWFLGL GEKKKQAMPD IVKAGDPVLH 100
    EPSQDIPLEE IGSERIQKII EEMVKVMRNA PGVGLAAPQI GIPLKIIVLE 150
    DTNEYISYAP KDETKAQDRR PFGLLVIINP KLKKKGNKTA LFFEGCLSVD 200
    GFRAVVERHL EVEVTGLDRN GKAIKVDASG WQARILQHEY DHLDGTLYVD 250
    KMAPRTFRTV ENLDLPLAAG CPKLGVC 277
    Length:277
    Mass (Da):30,986
    Last modified:March 1, 2001 - v1
    Checksum:i5E8DB2C695AEBE52
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF271258 mRNA. Translation: AAG33981.1.
    RefSeqiNP_001234703.1. NM_001247774.1.
    UniGeneiLes.2897.

    Genome annotation databases

    EnsemblPlantsiSolyc07g015860.2.1; Solyc07g015860.2.1; Solyc07g015860.2.
    GeneIDi544225.
    KEGGisly:544225.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF271258 mRNA. Translation: AAG33981.1 .
    RefSeqi NP_001234703.1. NM_001247774.1.
    UniGenei Les.2897.

    3D structure databases

    ProteinModelPortali Q9FUZ0.
    SMRi Q9FUZ0. Positions 88-275.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Solyc07g015860.2.1 ; Solyc07g015860.2.1 ; Solyc07g015860.2 .
    GeneIDi 544225.
    KEGGi sly:544225.

    Phylogenomic databases

    KOi K01462.
    OMAi KAQDRRP.

    Enzyme and pathway databases

    SABIO-RK Q9FUZ0.

    Family and domain databases

    Gene3Di 3.90.45.10. 1 hit.
    HAMAPi MF_00163. Pep_deformylase.
    InterProi IPR000181. Fmet_deformylase.
    IPR023635. Peptide_deformylase.
    [Graphical view ]
    PANTHERi PTHR10458. PTHR10458. 1 hit.
    Pfami PF01327. Pep_deformylase. 1 hit.
    [Graphical view ]
    PRINTSi PR01576. PDEFORMYLASE.
    SUPFAMi SSF56420. SSF56420. 1 hit.
    TIGRFAMsi TIGR00079. pept_deformyl. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms."
      Giglione C., Serero A., Pierre M., Boisson B., Meinnel T.
      EMBO J. 19:5916-5929(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].

    Entry informationi

    Entry nameiDEF1A_SOLLC
    AccessioniPrimary (citable) accession number: Q9FUZ0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 5, 2001
    Last sequence update: March 1, 2001
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3