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Protein

Zinc finger CCCH domain-containing protein 2

Gene

Os01g0192000

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri116 – 143C3H1-type 1PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri151 – 175C3H1-type 2PROSITE-ProRule annotationAdd BLAST25

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • zinc ion binding Source: Gramene

GO - Biological processi

  • jasmonic acid mediated signaling pathway Source: Gramene
  • leaf senescence Source: Gramene

Keywordsi

Molecular functionDNA-binding
Biological processJasmonic acid signaling pathway
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 2
Short name:
OsC3H2
Alternative name(s):
Protein DELAY OF THE ONSET OF SENESCENCE
Short name:
OsDOS
Gene namesi
Ordered Locus Names:Os01g0192000, LOC_Os01g09620
ORF Names:P0671B11.13
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

  • Nucleus 1 Publication

GO - Cellular componenti

  • nucleus Source: Gramene

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003468011 – 386Zinc finger CCCH domain-containing protein 2Add BLAST386

Proteomic databases

PaxDbiQ9FU27.

Expressioni

Developmental stagei

Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination.1 Publication

Gene expression databases

ExpressionAtlasiQ9FU27. baseline and differential.
GenevisibleiQ9FU27. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g09620.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FU27.
SMRiQ9FU27.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi26 – 32Poly-Gly7

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri116 – 143C3H1-type 1PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri151 – 175C3H1-type 2PROSITE-ProRule annotationAdd BLAST25

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1595. Eukaryota.
ENOG410XR0Z. LUCA.
InParanoidiQ9FU27.
OMAiWSYPASS.
OrthoDBiEOG09360F3R.

Family and domain databases

InterProiView protein in InterPro
IPR000571. Znf_CCCH.
PfamiView protein in Pfam
PF00642. zf-CCCH. 1 hit.
SMARTiView protein in SMART
SM00356. ZnF_C3H1. 2 hits.
PROSITEiView protein in PROSITE
PS50103. ZF_C3H1. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9FU27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGDEMTPYVI AALRDYLPAN
60 70 80 90 100
DVGVGADEEE EAAAMAAAVD AYACDEFRMY EFKVRRCARG RSHDWTECPF
110 120 130 140 150
AHPGEKARRR DPRKYHYSGT ACPDFRKGGC KRGDACEYAH GVFECWLHPA
160 170 180 190 200
RYRTQPCKDG TACRRRVCFF AHTPDQLRVL PAQQSSPRSV ASSPLAESYD
210 220 230 240 250
GSPLRRQAFE SYLTKTIMSS SPTSTLMSPP KSPPSESPPL SPDGAAAIRR
260 270 280 290 300
GSWPGVGSPV NDVLASFRQL RLNKVKSSPS GGWSYPSSSA VYGSPKAATG
310 320 330 340 350
LYSLPTTPLA STATVTTASS FMPNLEPLDL GLIGDEEPVQ RVESGRALRE
360 370 380
KVFERLSRDG AISGDATAFA TAGVGLDVDW VSDLIN
Length:386
Mass (Da):41,423
Last modified:March 1, 2001 - v1
Checksum:i0244BD287AA5A4C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002746 Genomic DNA. Translation: BAB12694.1.
AP008207 Genomic DNA. Translation: BAF04190.1.
AP014957 Genomic DNA. Translation: BAS70829.1.
AK100770 mRNA. No translation available.
RefSeqiXP_015621800.1. XM_015766314.1.
UniGeneiOs.20244.

Genome annotation databases

EnsemblPlantsiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
GeneIDi4327304.
GrameneiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
KEGGiosa:4327304.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002746 Genomic DNA. Translation: BAB12694.1.
AP008207 Genomic DNA. Translation: BAF04190.1.
AP014957 Genomic DNA. Translation: BAS70829.1.
AK100770 mRNA. No translation available.
RefSeqiXP_015621800.1. XM_015766314.1.
UniGeneiOs.20244.

3D structure databases

ProteinModelPortaliQ9FU27.
SMRiQ9FU27.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g09620.1.

Proteomic databases

PaxDbiQ9FU27.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
GeneIDi4327304.
GrameneiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
KEGGiosa:4327304.

Phylogenomic databases

eggNOGiKOG1595. Eukaryota.
ENOG410XR0Z. LUCA.
InParanoidiQ9FU27.
OMAiWSYPASS.
OrthoDBiEOG09360F3R.

Gene expression databases

ExpressionAtlasiQ9FU27. baseline and differential.
GenevisibleiQ9FU27. OS.

Family and domain databases

InterProiView protein in InterPro
IPR000571. Znf_CCCH.
PfamiView protein in Pfam
PF00642. zf-CCCH. 1 hit.
SMARTiView protein in SMART
SM00356. ZnF_C3H1. 2 hits.
PROSITEiView protein in PROSITE
PS50103. ZF_C3H1. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiC3H2_ORYSJ
AccessioniPrimary (citable) accession number: Q9FU27
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: March 1, 2001
Last modified: June 7, 2017
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.