Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Disease resistance protein RLM3

Gene

RLM3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

TIR-NB-LRR receptor-like protein that confers resistance to the pathogens Leptosphaeria maculans (blackleg disease), Botrytis cinerea, Alternaria brassicicola and Alternaria brassicae. Required for efficient callose deposition downstream of RLM1 during infection with L.maculans.1 Publication

GO - Molecular functioni

GO - Biological processi

  • defense response to fungus, incompatible interaction Source: TAIR
  • regulation of defense response by callose deposition Source: TAIR
  • signal transduction Source: InterPro

Keywordsi

Biological processPlant defense
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Disease resistance protein RLM3Curated
Alternative name(s):
Protein RESISTANCE TO LEPTOSPHAERIA MACULANS 31 Publication
Gene namesi
Name:RLM31 Publication
Ordered Locus Names:At4g16990Imported
ORF Names:dl4525wImported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G16990.
TAIRilocus:2130319. AT4G16990.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004333811 – 796Disease resistance protein RLM3Add BLAST796

Proteomic databases

PaxDbiQ9FT77.

PTM databases

iPTMnetiQ9FT77.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FT77. baseline and differential.
GenevisibleiQ9FT77. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G16990.2.

Structurei

3D structure databases

ProteinModelPortaliQ9FT77.
SMRiQ9FT77.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 145TIRPROSITE-ProRule annotationAdd BLAST139
Domaini185 – 413NB-ARCSequence analysisAdd BLAST229
Domaini434 – 486BRX 1PROSITE-ProRule annotationAdd BLAST53
Domaini538 – 594BRX 2PROSITE-ProRule annotationAdd BLAST57
Domaini719 – 772BRX 3PROSITE-ProRule annotationAdd BLAST54

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000064695.
InParanoidiQ9FT77.
OMAiHEWIRTG.
OrthoDBiEOG093612DT.
PhylomeDBiQ9FT77.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
InterProiView protein in InterPro
IPR013591. Brevis_radix_dom.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
PfamiView protein in Pfam
PF08381. BRX. 3 hits.
PF00931. NB-ARC. 1 hit.
PF01582. TIR. 1 hit.
SMARTiView protein in SMART
SM00255. TIR. 1 hit.
SUPFAMiSSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS51514. BRX. 3 hits.
PS50104. TIR. 1 hit.

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9FT77-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MKSSSSQSYD VFPNFRGEDV RHSLVSHLRK ELDRKFINTF NDNRIERSRK
60 70 80 90 100
ITPELLLAIE NSRISLVVFS KNYASSTWCL DELVKIQECY EKLDQMVIPI
110 120 130 140 150
FYKVDPSHVR KQTGEFGMVF GETCKGRTEN EKRKWMRALA EVAHLAGEDL
160 170 180 190 200
RNWRSEAEML ENIAKDVSNK LFPPSNNFSD FVGIEAHIEA LISMLRFDSK
210 220 230 240 250
KARMIGICGP SETGKTTIGR ALYSRLKSDF HHRAFVAYKR KIRSDYDQKL
260 270 280 290 300
YWEEQFLSEI LCQKDIKIEE CGAVEQRLKH TKVLIVLDDV DDIELLKTLV
310 320 330 340 350
GRIRWFGSES KIVVITQKRE LLKAHNIAHV YEVGFPSEEL AHQMFCRYAF
360 370 380 390 400
GKNSPPHGFN ELADEAAKIA GNRPKALKYV GSSFRRLDKE QWVKMLSEFR
410 420 430 440 450
SNGNKLKISY DELDGKGQDY VACLTNGSNS QVKAEWIHLA LGVSILLNIR
460 470 480 490 500
SDGTTILKHL SYNRSMAQQA KIWWYENLER VCKKYNICGI DSSTDGGGST
510 520 530 540 550
YGQCSNSQFQ RNMDASPGGN KTSNQSTKDS PRASQVEKEK IEYCEPHVYI
560 570 580 590 600
TPAIFSDGTR APKYVESSSR RVTQVHHAKT WWPENCEKVY ENHNNIYGID
610 620 630 640 650
RSIDGGDKFE GKSKVSDGGL DGKDQGSMYG QSSNSELQIN MDADNRRCEP
660 670 680 690 700
VSEMLFKNYN VCSPNGLTDV NCSNPQSQRK LDASLKKDKI VHEWIRTGSG
710 720 730 740 750
FFFDFQGPKS IVSAAQVDEK NFEYCEQGVY ITLGILSGGI IVLKHLEFSR
760 770 780 790
RMAQQAKVWW SENWIKVYQE HNICGIDKSF DGRFDDRRVI RQLRPN
Length:796
Mass (Da):91,154
Last modified:March 1, 2001 - v1
Checksum:i30E0AF0590B6BA94
GO
Isoform 2 (identifier: Q9FT77-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     567-567: Missing.
     667-671: LTDVN → KGSDI
     672-796: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:670
Mass (Da):76,462
Checksum:iBB10F2CBEDCC9AC3
GO
Isoform 3 (identifier: Q9FT77-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-158: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:638
Mass (Da):72,638
Checksum:i3ABBDBC2466056E4
GO

Sequence cautioni

The sequence CAB46050 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80970 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti601R → G in BAF02228 (Ref. 6) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0577581 – 158Missing in isoform 3. Add BLAST158
Alternative sequenceiVSP_057759567Missing in isoform 2. 1
Alternative sequenceiVSP_057760667 – 671LTDVN → KGSDI in isoform 2. 5
Alternative sequenceiVSP_057761672 – 796Missing in isoform 2. Add BLAST125

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ299417 mRNA. Translation: CAC14089.1.
Z97342 Genomic DNA. Translation: CAB46050.1. Sequence problems.
AL161545 Genomic DNA. Translation: CAB80970.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83831.1.
CP002687 Genomic DNA. Translation: AEE83832.1.
CP002687 Genomic DNA. Translation: AEE83833.1.
CP002687 Genomic DNA. Translation: ANM68095.1.
AK175249 mRNA. Translation: BAD43012.1.
AK230430 mRNA. Translation: BAF02228.1.
PIRiF85189.
RefSeqiNP_001319972.1. NM_001341182.1. [Q9FT77-1]
NP_193432.4. NM_117803.4. [Q9FT77-2]
NP_849399.1. NM_179068.2. [Q9FT77-1]
NP_849400.2. NM_179069.2. [Q9FT77-3]
UniGeneiAt.4452.

Genome annotation databases

EnsemblPlantsiAT4G16990.1; AT4G16990.1; AT4G16990. [Q9FT77-2]
AT4G16990.13; AT4G16990.13; AT4G16990. [Q9FT77-1]
AT4G16990.2; AT4G16990.2; AT4G16990. [Q9FT77-1]
AT4G16990.3; AT4G16990.3; AT4G16990. [Q9FT77-3]
GeneIDi827407.
GrameneiAT4G16990.1; AT4G16990.1; AT4G16990.
AT4G16990.13; AT4G16990.13; AT4G16990.
AT4G16990.2; AT4G16990.2; AT4G16990.
AT4G16990.3; AT4G16990.3; AT4G16990.
KEGGiath:AT4G16990.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiRLM3_ARATH
AccessioniPrimary (citable) accession number: Q9FT77
Secondary accession number(s): F4JNC3
, Q0WKX9, Q3EA02, Q682W8, Q9SUK2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 24, 2015
Last sequence update: March 1, 2001
Last modified: August 30, 2017
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names