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Protein

Homeobox protein knotted-1-like 1

Gene

OSH6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor that may be involved in shoot formation during early embryogenesis.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi209 – 27264Homeobox; TALE-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein knotted-1-like 1
Alternative name(s):
Homeobox protein HOS16
Homeobox protein OSH6
Gene namesi
Name:OSH6
Synonyms:HOS16
Ordered Locus Names:Os01g0302500, LOC_Os01g19694
ORF Names:B1146F03.18, P0035H10.13
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 301301Homeobox protein knotted-1-like 1PRO_0000360004Add
BLAST

Proteomic databases

PaxDbiQ9FP29.

Expressioni

Developmental stagei

Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage.1 Publication

Gene expression databases

ExpressionAtlasiQ9FP29. baseline and differential.
GenevisibleiQ9FP29. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g19694.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FP29.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini188 – 20821ELKPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi86 – 938Poly-Gly

Sequence similaritiesi

Belongs to the TALE/KNOX homeobox family.PROSITE-ProRule annotation
Contains 1 ELK domain.PROSITE-ProRule annotation
Contains 1 homeobox DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiKOG0773. Eukaryota.
ENOG410XPMQ. LUCA.
InParanoidiQ9FP29.
OMAiGEIGVDP.
OrthoDBiEOG09360KG3.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR005539. ELK_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR008422. Homeobox_KN_domain.
IPR009057. Homeodomain-like.
IPR005540. KNOX1.
IPR005541. KNOX2.
[Graphical view]
PfamiPF03789. ELK. 1 hit.
PF05920. Homeobox_KN. 1 hit.
PF03790. KNOX1. 1 hit.
PF03791. KNOX2. 1 hit.
[Graphical view]
SMARTiSM01188. ELK. 1 hit.
SM00389. HOX. 1 hit.
SM01255. KNOX1. 1 hit.
SM01256. KNOX2. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51213. ELK. 1 hit.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FP29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDLYSIHPG ISRVGGAASE ASGVGVVVGG GGGSSSSDLT ELMKAQIAGH
60 70 80 90 100
PRYPTLLSAY IECRKVGAPP EVASLLKEIG RERRAGGGGG GAGQIGVDPE
110 120 130 140 150
LDEFMEAYCR VLVRYKEELS RPFDEAASFL SSIQTQLSNL CSGATSPPAT
160 170 180 190 200
TATHSDEMVG SSDEDQCSGE TDMLDIGQEQ SSRLADHELK EMLLKKYSGC
210 220 230 240 250
LSRLRSEFLK KRKKGKLPKD ARSALLEWWN THYRWPYPTE EDKLRLAART
260 270 280 290 300
GLDPKQINNW FINQRKRHWK PSDGMRFALM EGVAGGSSGT TLYFDTGTIG

P
Length:301
Mass (Da):32,736
Last modified:March 1, 2001 - v1
Checksum:iC61314553CAA7539
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti279 – 2791L → F in BAA79224 (PubMed:10488233).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB028883 mRNA. Translation: BAA79224.1.
AP002881 Genomic DNA. Translation: BAB19772.1.
AP003206 Genomic DNA. Translation: BAB93157.1.
AP008207 Genomic DNA. Translation: BAF04741.1.
AP014957 Genomic DNA. Translation: BAS71730.1.
AB007626 mRNA. Translation: BAA77820.1.
RefSeqiXP_015634297.1. XM_015778811.1.
UniGeneiOs.4163.

Genome annotation databases

EnsemblPlantsiOS01T0302500-01; OS01T0302500-01; OS01G0302500.
GeneIDi4325788.
GrameneiOS01T0302500-01; OS01T0302500-01; OS01G0302500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB028883 mRNA. Translation: BAA79224.1.
AP002881 Genomic DNA. Translation: BAB19772.1.
AP003206 Genomic DNA. Translation: BAB93157.1.
AP008207 Genomic DNA. Translation: BAF04741.1.
AP014957 Genomic DNA. Translation: BAS71730.1.
AB007626 mRNA. Translation: BAA77820.1.
RefSeqiXP_015634297.1. XM_015778811.1.
UniGeneiOs.4163.

3D structure databases

ProteinModelPortaliQ9FP29.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g19694.1.

Proteomic databases

PaxDbiQ9FP29.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0302500-01; OS01T0302500-01; OS01G0302500.
GeneIDi4325788.
GrameneiOS01T0302500-01; OS01T0302500-01; OS01G0302500.

Phylogenomic databases

eggNOGiKOG0773. Eukaryota.
ENOG410XPMQ. LUCA.
InParanoidiQ9FP29.
OMAiGEIGVDP.
OrthoDBiEOG09360KG3.

Gene expression databases

ExpressionAtlasiQ9FP29. baseline and differential.
GenevisibleiQ9FP29. OS.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR005539. ELK_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR008422. Homeobox_KN_domain.
IPR009057. Homeodomain-like.
IPR005540. KNOX1.
IPR005541. KNOX2.
[Graphical view]
PfamiPF03789. ELK. 1 hit.
PF05920. Homeobox_KN. 1 hit.
PF03790. KNOX1. 1 hit.
PF03791. KNOX2. 1 hit.
[Graphical view]
SMARTiSM01188. ELK. 1 hit.
SM00389. HOX. 1 hit.
SM01255. KNOX1. 1 hit.
SM01256. KNOX2. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51213. ELK. 1 hit.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiKNOS1_ORYSJ
AccessioniPrimary (citable) accession number: Q9FP29
Secondary accession number(s): A0A0P0V1U2, Q9SXM8, Q9XIV6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.