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Protein

Homeobox protein knotted-1-like 1

Gene

OSH6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor that may be involved in shoot formation during early embryogenesis.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi209 – 272Homeobox; TALE-typePROSITE-ProRule annotationAdd BLAST64

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein knotted-1-like 1
Alternative name(s):
Homeobox protein HOS16
Homeobox protein OSH6
Gene namesi
Name:OSH6
Synonyms:HOS16
Ordered Locus Names:Os01g0302500, LOC_Os01g19694
ORF Names:B1146F03.18, P0035H10.13
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003600041 – 301Homeobox protein knotted-1-like 1Add BLAST301

Proteomic databases

PaxDbiQ9FP29

Expressioni

Developmental stagei

Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage.1 Publication

Gene expression databases

ExpressionAtlasiQ9FP29 differential
GenevisibleiQ9FP29 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g19694.1

Structurei

3D structure databases

ProteinModelPortaliQ9FP29
SMRiQ9FP29
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini188 – 208ELKPROSITE-ProRule annotationAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi86 – 93Poly-Gly8

Sequence similaritiesi

Belongs to the TALE/KNOX homeobox family.PROSITE-ProRule annotation

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiKOG0773 Eukaryota
ENOG410XPMQ LUCA
InParanoidiQ9FP29
OMAiATHSDDM
OrthoDBiEOG09360KG3

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR005539 ELK_dom
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR008422 Homeobox_KN_domain
IPR005540 KNOX1
IPR005541 KNOX2
PfamiView protein in Pfam
PF03789 ELK, 1 hit
PF05920 Homeobox_KN, 1 hit
PF03790 KNOX1, 1 hit
PF03791 KNOX2, 1 hit
SMARTiView protein in SMART
SM01188 ELK, 1 hit
SM00389 HOX, 1 hit
SM01255 KNOX1, 1 hit
SM01256 KNOX2, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51213 ELK, 1 hit
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FP29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDLYSIHPG ISRVGGAASE ASGVGVVVGG GGGSSSSDLT ELMKAQIAGH
60 70 80 90 100
PRYPTLLSAY IECRKVGAPP EVASLLKEIG RERRAGGGGG GAGQIGVDPE
110 120 130 140 150
LDEFMEAYCR VLVRYKEELS RPFDEAASFL SSIQTQLSNL CSGATSPPAT
160 170 180 190 200
TATHSDEMVG SSDEDQCSGE TDMLDIGQEQ SSRLADHELK EMLLKKYSGC
210 220 230 240 250
LSRLRSEFLK KRKKGKLPKD ARSALLEWWN THYRWPYPTE EDKLRLAART
260 270 280 290 300
GLDPKQINNW FINQRKRHWK PSDGMRFALM EGVAGGSSGT TLYFDTGTIG

P
Length:301
Mass (Da):32,736
Last modified:March 1, 2001 - v1
Checksum:iC61314553CAA7539
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti279L → F in BAA79224 (PubMed:10488233).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB028883 mRNA Translation: BAA79224.1
AP002881 Genomic DNA Translation: BAB19772.1
AP003206 Genomic DNA Translation: BAB93157.1
AP008207 Genomic DNA Translation: BAF04741.1
AP014957 Genomic DNA Translation: BAS71730.1
AB007626 mRNA Translation: BAA77820.1
RefSeqiXP_015634297.1, XM_015778811.1
UniGeneiOs.4163

Genome annotation databases

EnsemblPlantsiOs01t0302500-01; Os01t0302500-01; Os01g0302500
GeneIDi4325788
GrameneiOs01t0302500-01; Os01t0302500-01; Os01g0302500
KEGGiosa:4325788

Similar proteinsi

Entry informationi

Entry nameiKNOS1_ORYSJ
AccessioniPrimary (citable) accession number: Q9FP29
Secondary accession number(s): A0A0P0V1U2, Q9SXM8, Q9XIV6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: March 1, 2001
Last modified: May 23, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

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