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Protein

Protein NRT1/ PTR FAMILY 5.3

Gene

NPF5.3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Peptide transporter.By similarity

GO - Molecular functioni

GO - Biological processi

  • response to nematode Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NRT1/ PTR FAMILY 5.3
Short name:
AtNPF5.3
Alternative name(s):
Peptide transporter PTR3-B
Gene namesi
Name:NPF5.3
Synonyms:PTR3-B
Ordered Locus Names:At5g46040
ORF Names:MCL19.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G46040.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei77 – 97HelicalSequence analysisAdd BLAST21
Transmembranei100 – 120HelicalSequence analysisAdd BLAST21
Transmembranei141 – 161HelicalSequence analysisAdd BLAST21
Transmembranei189 – 209HelicalSequence analysisAdd BLAST21
Transmembranei217 – 237HelicalSequence analysisAdd BLAST21
Transmembranei334 – 354HelicalSequence analysisAdd BLAST21
Transmembranei370 – 390HelicalSequence analysisAdd BLAST21
Transmembranei408 – 428HelicalSequence analysisAdd BLAST21
Transmembranei449 – 469HelicalSequence analysisAdd BLAST21
Transmembranei492 – 512HelicalSequence analysisAdd BLAST21
Transmembranei538 – 558HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003001011 – 586Protein NRT1/ PTR FAMILY 5.3Add BLAST586

Proteomic databases

PaxDbiQ9FNL8.

Expressioni

Tissue specificityi

Expressed in roots and siliques.1 Publication

Gene expression databases

GenevisibleiQ9FNL8. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G46040.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FNL8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1237. Eukaryota.
COG3104. LUCA.
HOGENOMiHOG000237400.
InParanoidiQ9FNL8.
OMAiLHILIMI.
OrthoDBiEOG093607P9.
PhylomeDBiQ9FNL8.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR020846. MFS_dom.
IPR000109. POT_fam.
[Graphical view]
PANTHERiPTHR11654. PTHR11654. 1 hit.
PfamiPF00854. PTR2. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9FNL8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVEEVGDDY TKDGTVDLRG NRVRRSQTGR WKACSFVVVY EVFERMAYYG
60 70 80 90 100
ISSNLVIYMT TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VADAHFGRYI
110 120 130 140 150
TFVISSAIYL LGMALLTLSV SLPGLKPPKC STANVENCEK ASVIQLAVFF
160 170 180 190 200
GALYTLAIGT GGTKPNISTI GADQFDEFDP KDKIHKHSFF NWWMFSIFFG
210 220 230 240 250
TFFATTVLVY VQDNVGWAIG YGLSTLGLAF SIFIFLLGTR LYRHKLPMGS
260 270 280 290 300
PFTKMARVIV ASLRKAREPM SSDSTRFYEL PPMEYASKRA FPIHSTSSLR
310 320 330 340 350
FLNRASLKTG STHKWRLCTI TEVEETKQML KMLPVLFVTF VPSMMLAQIM
360 370 380 390 400
TLFIKQGTTL DRRLTNNFSI PPASLLGFTT FSMLVSIVIY DRVFVKFMRK
410 420 430 440 450
LTGNPRGITL LQRMGIGMIL HILIMIIASI TERYRLKVAA EHGLTHQTAV
460 470 480 490 500
PIPLSIFTLL PQYVLMGLAD AFIEIAKLEF FYDQAPESMK SLGTSYTSTS
510 520 530 540 550
MAVGYFMSSI LLSSVSQITK KQGRGWIQNN LNESRLDNYY MFFAVLNLLN
560 570 580
FILFLVVIRF YEYRADVTQS ANVEQKEPNM VDNYNE
Length:586
Mass (Da):66,201
Last modified:March 1, 2001 - v1
Checksum:iA0AC12A0159595C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006698 Genomic DNA. Translation: BAB08249.1.
CP002688 Genomic DNA. Translation: AED95331.1.
RefSeqiNP_199416.1. NM_123972.1.
UniGeneiAt.29979.

Genome annotation databases

EnsemblPlantsiAT5G46040.1; AT5G46040.1; AT5G46040.
GeneIDi834645.
GrameneiAT5G46040.1; AT5G46040.1; AT5G46040.
KEGGiath:AT5G46040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006698 Genomic DNA. Translation: BAB08249.1.
CP002688 Genomic DNA. Translation: AED95331.1.
RefSeqiNP_199416.1. NM_123972.1.
UniGeneiAt.29979.

3D structure databases

ProteinModelPortaliQ9FNL8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G46040.1.

Proteomic databases

PaxDbiQ9FNL8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G46040.1; AT5G46040.1; AT5G46040.
GeneIDi834645.
GrameneiAT5G46040.1; AT5G46040.1; AT5G46040.
KEGGiath:AT5G46040.

Organism-specific databases

TAIRiAT5G46040.

Phylogenomic databases

eggNOGiKOG1237. Eukaryota.
COG3104. LUCA.
HOGENOMiHOG000237400.
InParanoidiQ9FNL8.
OMAiLHILIMI.
OrthoDBiEOG093607P9.
PhylomeDBiQ9FNL8.

Miscellaneous databases

PROiQ9FNL8.

Gene expression databases

GenevisibleiQ9FNL8. AT.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR020846. MFS_dom.
IPR000109. POT_fam.
[Graphical view]
PANTHERiPTHR11654. PTHR11654. 1 hit.
PfamiPF00854. PTR2. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiPTR4_ARATH
AccessioniPrimary (citable) accession number: Q9FNL8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: March 1, 2001
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.