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Protein

Protein NRT1/ PTR FAMILY 5.3

Gene

NPF5.3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Peptide transporter.By similarity

GO - Molecular functioni

GO - Biological processi

  • response to nematode Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NRT1/ PTR FAMILY 5.3
Short name:
AtNPF5.3
Alternative name(s):
Peptide transporter PTR3-B
Gene namesi
Name:NPF5.3
Synonyms:PTR3-B
Ordered Locus Names:At5g46040
ORF Names:MCL19.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G46040.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei77 – 9721HelicalSequence analysisAdd
BLAST
Transmembranei100 – 12021HelicalSequence analysisAdd
BLAST
Transmembranei141 – 16121HelicalSequence analysisAdd
BLAST
Transmembranei189 – 20921HelicalSequence analysisAdd
BLAST
Transmembranei217 – 23721HelicalSequence analysisAdd
BLAST
Transmembranei334 – 35421HelicalSequence analysisAdd
BLAST
Transmembranei370 – 39021HelicalSequence analysisAdd
BLAST
Transmembranei408 – 42821HelicalSequence analysisAdd
BLAST
Transmembranei449 – 46921HelicalSequence analysisAdd
BLAST
Transmembranei492 – 51221HelicalSequence analysisAdd
BLAST
Transmembranei538 – 55821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 586586Protein NRT1/ PTR FAMILY 5.3PRO_0000300101Add
BLAST

Proteomic databases

PaxDbiQ9FNL8.
PRIDEiQ9FNL8.

Expressioni

Tissue specificityi

Expressed in roots and siliques.1 Publication

Gene expression databases

GenevisibleiQ9FNL8. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G46040.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FNL8.
SMRiQ9FNL8. Positions 17-564.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1237. Eukaryota.
COG3104. LUCA.
HOGENOMiHOG000237400.
InParanoidiQ9FNL8.
OMAiLHILIMI.
PhylomeDBiQ9FNL8.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR000109. POT_fam.
[Graphical view]
PANTHERiPTHR11654. PTHR11654. 1 hit.
PfamiPF00854. PTR2. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9FNL8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVEEVGDDY TKDGTVDLRG NRVRRSQTGR WKACSFVVVY EVFERMAYYG
60 70 80 90 100
ISSNLVIYMT TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VADAHFGRYI
110 120 130 140 150
TFVISSAIYL LGMALLTLSV SLPGLKPPKC STANVENCEK ASVIQLAVFF
160 170 180 190 200
GALYTLAIGT GGTKPNISTI GADQFDEFDP KDKIHKHSFF NWWMFSIFFG
210 220 230 240 250
TFFATTVLVY VQDNVGWAIG YGLSTLGLAF SIFIFLLGTR LYRHKLPMGS
260 270 280 290 300
PFTKMARVIV ASLRKAREPM SSDSTRFYEL PPMEYASKRA FPIHSTSSLR
310 320 330 340 350
FLNRASLKTG STHKWRLCTI TEVEETKQML KMLPVLFVTF VPSMMLAQIM
360 370 380 390 400
TLFIKQGTTL DRRLTNNFSI PPASLLGFTT FSMLVSIVIY DRVFVKFMRK
410 420 430 440 450
LTGNPRGITL LQRMGIGMIL HILIMIIASI TERYRLKVAA EHGLTHQTAV
460 470 480 490 500
PIPLSIFTLL PQYVLMGLAD AFIEIAKLEF FYDQAPESMK SLGTSYTSTS
510 520 530 540 550
MAVGYFMSSI LLSSVSQITK KQGRGWIQNN LNESRLDNYY MFFAVLNLLN
560 570 580
FILFLVVIRF YEYRADVTQS ANVEQKEPNM VDNYNE
Length:586
Mass (Da):66,201
Last modified:March 1, 2001 - v1
Checksum:iA0AC12A0159595C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006698 Genomic DNA. Translation: BAB08249.1.
CP002688 Genomic DNA. Translation: AED95331.1.
RefSeqiNP_199416.1. NM_123972.1.
UniGeneiAt.29979.

Genome annotation databases

EnsemblPlantsiAT5G46040.1; AT5G46040.1; AT5G46040.
GeneIDi834645.
GrameneiAT5G46040.1; AT5G46040.1; AT5G46040.
KEGGiath:AT5G46040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006698 Genomic DNA. Translation: BAB08249.1.
CP002688 Genomic DNA. Translation: AED95331.1.
RefSeqiNP_199416.1. NM_123972.1.
UniGeneiAt.29979.

3D structure databases

ProteinModelPortaliQ9FNL8.
SMRiQ9FNL8. Positions 17-564.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G46040.1.

Proteomic databases

PaxDbiQ9FNL8.
PRIDEiQ9FNL8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G46040.1; AT5G46040.1; AT5G46040.
GeneIDi834645.
GrameneiAT5G46040.1; AT5G46040.1; AT5G46040.
KEGGiath:AT5G46040.

Organism-specific databases

TAIRiAT5G46040.

Phylogenomic databases

eggNOGiKOG1237. Eukaryota.
COG3104. LUCA.
HOGENOMiHOG000237400.
InParanoidiQ9FNL8.
OMAiLHILIMI.
PhylomeDBiQ9FNL8.

Miscellaneous databases

PROiQ9FNL8.

Gene expression databases

GenevisibleiQ9FNL8. AT.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR000109. POT_fam.
[Graphical view]
PANTHERiPTHR11654. PTHR11654. 1 hit.
PfamiPF00854. PTR2. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones."
    Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 4:291-300(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Nitrate transporters and peptide transporters."
    Tsay Y.F., Chiu C.C., Tsai C.B., Ho C.H., Hsu P.K.
    FEBS Lett. 581:2290-2300(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, GENE FAMILY.
  4. Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiPTR4_ARATH
AccessioniPrimary (citable) accession number: Q9FNL8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: March 1, 2001
Last modified: February 17, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.