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Protein
Submitted name:

Similarity to unknown protein

Gene

At5g24320

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Similarity to unknown proteinImported
Submitted name:
Transducin/WD40 domain-containing proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:At5g24320Imported, AXX17_At5g24140Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G24320.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FNF0. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G24320.2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini247 – 288WD_REPEATS_REGIONInterPro annotationAdd BLAST42
Domaini352 – 434WD_REPEATS_REGIONInterPro annotationAdd BLAST83

Phylogenomic databases

eggNOGiKOG0283. Eukaryota.
ENOG410XQPJ. LUCA.
HOGENOMiHOG000239143.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FNF0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESLIEEEEE SRFFDAHEEI ASCSSPCKIE SPSSISGEFR YDVWIKSPGN
60 70 80 90 100
TEERREKFLK WMGLSSTVNE SKSGNVYRLS SSVNESAVLM SLKSDDDEFS
110 120 130 140 150
SSRCDSFSPS ESVDRVVNES LCKEEGEVDS GMVLRNLGFV DDGDISSSLC
160 170 180 190 200
SLSSSPVSDK IVKEHGEPKL LPDPMVAEEE REVSGIMKRV KEKWLSRLYK
210 220 230 240 250
VRNKRSAGGD DNGGEVAVCG SRIERVKVKE YKKEAKELSA LFKGQEIQAH
260 270 280 290 300
EGAILAMKFS PDGRYLASAG EDGVLRVWSV VEDERCEEHD VPKIDPSCIY
310 320 330 340 350
FEVSKLSELR PVAVEKDGIT GSLMSPRKTT ESACVIIPPK IFRVLDKPLH
360 370 380 390 400
EFLGHSGDIL DISWSKNNRL LSASVDNSVR LWQIGCEDCL GIFSHNNYVT
410 420 430 440 450
SVQFNPVDDD HFISGSIDGK VRIWSASQCQ VVDWADARGI VTAVCYQPDG
460 470 480 490 500
QAVIIGTLTS DCRFYNVSGH CLQLDGHICL HNKKKSSNKR IIGFQFDSTD
510 520 530 540 550
PSRVMVASAD SQVRIISGRN VVHKYKGSRN AGNQISASFT ADGKHIVSAC
560 570 580 590 600
DDSSVYVWNC VGHDPEQSSP GFFSHTKRLK IRSFEKFSAD VSVAIPWCGF
610 620 630 640 650
TPVLSGGSEL SPSLFSLGRE YVLDSPKGSA TWPEEKLASS FSPVKAIRRS
660 670 680 690
HYKFLRSSCR RTSESSHLWG LVIVTGGWDG RIKLFHNYGL PVPV
Length:694
Mass (Da):76,817
Last modified:March 1, 2001 - v1
Checksum:i3D3E6346EFD75702
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002688 Genomic DNA. Translation: AED93293.1.
AB006701 Genomic DNA. Translation: BAB10398.1.
LUHQ01000005 Genomic DNA. Translation: OAO89763.1.
RefSeqiNP_851068.1. NM_180737.3.
UniGeneiAt.43910.

Genome annotation databases

EnsemblPlantsiAT5G24320.1; AT5G24320.1; AT5G24320.
GeneIDi832502.
GrameneiAT5G24320.1; AT5G24320.1; AT5G24320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002688 Genomic DNA. Translation: AED93293.1.
AB006701 Genomic DNA. Translation: BAB10398.1.
LUHQ01000005 Genomic DNA. Translation: OAO89763.1.
RefSeqiNP_851068.1. NM_180737.3.
UniGeneiAt.43910.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G24320.2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G24320.1; AT5G24320.1; AT5G24320.
GeneIDi832502.
GrameneiAT5G24320.1; AT5G24320.1; AT5G24320.

Organism-specific databases

TAIRiAT5G24320.

Phylogenomic databases

eggNOGiKOG0283. Eukaryota.
ENOG410XQPJ. LUCA.
HOGENOMiHOG000239143.

Gene expression databases

ExpressionAtlasiQ9FNF0. baseline and differential.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9FNF0_ARATH
AccessioniPrimary (citable) accession number: Q9FNF0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.