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Protein

Putative pentatricopeptide repeat-containing protein At5g40405

Gene

PCMP-H14

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At5g40405
Gene namesi
Name:PCMP-H14
Ordered Locus Names:At5g40405
ORF Names:MPO12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G40405.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 612612Putative pentatricopeptide repeat-containing protein At5g40405PRO_0000363547Add
BLAST

Proteomic databases

PaxDbiQ9FND7.
PRIDEiQ9FND7.

PTM databases

iPTMnetiQ9FND7.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G40405.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FND7.
SMRiQ9FND7. Positions 57-475.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati70 – 10435PPR 1Add
BLAST
Repeati107 – 14135PPR 2Add
BLAST
Repeati142 – 17231PPR 3Add
BLAST
Repeati173 – 20331PPR 4Add
BLAST
Repeati204 – 23835PPR 5Add
BLAST
Repeati239 – 27335PPR 6Add
BLAST
Repeati274 – 30431PPR 7Add
BLAST
Repeati305 – 33935PPR 8Add
BLAST
Repeati340 – 37536PPR 9Add
BLAST
Repeati376 – 41035PPR 10Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni411 – 48676Type E motifAdd
BLAST
Regioni487 – 51731Type E(+) motifAdd
BLAST
Regioni518 – 61295Type DYW motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FND7.
OMAiLETANHG.
PhylomeDBiQ9FND7.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FND7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKHPAI ALLDSGITFK EVRQIHAKLY VDGTLKDDHL VGHFVKAVAL
60 70 80 90 100
SDHKYLDYAN QILDRSEKPT LFALNSMIRA HCKSPVPEKS FDFYRRILSS
110 120 130 140 150
GNDLKPDNYT VNFLVQACTG LRMRETGLQV HGMTIRRGFD NDPHVQTGLI
160 170 180 190 200
SLYAELGCLD SCHKVFNSIP CPDFVCRTAM VTACARCGDV VFARKLFEGM
210 220 230 240 250
PERDPIAWNA MISGYAQVGE SREALNVFHL MQLEGVKVNG VAMISVLSAC
260 270 280 290 300
TQLGALDQGR WAHSYIERNK IKITVRLATT LVDLYAKCGD MEKAMEVFWG
310 320 330 340 350
MEEKNVYTWS SALNGLAMNG FGEKCLELFS LMKQDGVTPN AVTFVSVLRG
360 370 380 390 400
CSVVGFVDEG QRHFDSMRNE FGIEPQLEHY GCLVDLYARA GRLEDAVSII
410 420 430 440 450
QQMPMKPHAA VWSSLLHASR MYKNLELGVL ASKKMLELET ANHGAYVLLS
460 470 480 490 500
NIYADSNDWD NVSHVRQSMK SKGVRKQPGC SVMEVNGEVH EFFVGDKSHP
510 520 530 540 550
KYTQIDAVWK DISRRLRLAG YKADTTPVMF DIDEEEKEDA LCLHSEKAAI
560 570 580 590 600
AFGIMSLKED VPIRIVKNLR VCGDCHQVSM MISKIFNREI IVRDRNRFHH
610
FKDGHCSCNG FW
Length:612
Mass (Da):68,871
Last modified:March 1, 2001 - v1
Checksum:iD31AC6D3D1F1C852
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006702 Genomic DNA. Translation: BAB11597.1.
CP002688 Genomic DNA. Translation: AED94544.1.
RefSeqiNP_001031987.1. NM_001036910.1.
UniGeneiAt.63338.

Genome annotation databases

EnsemblPlantsiAT5G40405.1; AT5G40405.1; AT5G40405.
GeneIDi3771385.
GrameneiAT5G40405.1; AT5G40405.1; AT5G40405.
KEGGiath:AT5G40405.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006702 Genomic DNA. Translation: BAB11597.1.
CP002688 Genomic DNA. Translation: AED94544.1.
RefSeqiNP_001031987.1. NM_001036910.1.
UniGeneiAt.63338.

3D structure databases

ProteinModelPortaliQ9FND7.
SMRiQ9FND7. Positions 57-475.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G40405.1.

PTM databases

iPTMnetiQ9FND7.

Proteomic databases

PaxDbiQ9FND7.
PRIDEiQ9FND7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G40405.1; AT5G40405.1; AT5G40405.
GeneIDi3771385.
GrameneiAT5G40405.1; AT5G40405.1; AT5G40405.
KEGGiath:AT5G40405.

Organism-specific databases

TAIRiAT5G40405.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FND7.
OMAiLETANHG.
PhylomeDBiQ9FND7.

Miscellaneous databases

PROiQ9FND7.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones."
    Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 4:291-300(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  4. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP410_ARATH
AccessioniPrimary (citable) accession number: Q9FND7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: May 11, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.