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Protein

Putative pentatricopeptide repeat-containing protein At5g40405

Gene

PCMP-H14

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At5g40405
Gene namesi
Name:PCMP-H14
Ordered Locus Names:At5g40405
ORF Names:MPO12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G40405.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635471 – 612Putative pentatricopeptide repeat-containing protein At5g40405Add BLAST612

Proteomic databases

PaxDbiQ9FND7.
PRIDEiQ9FND7.

PTM databases

iPTMnetiQ9FND7.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G40405.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FND7.
SMRiQ9FND7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati70 – 104PPR 1Add BLAST35
Repeati107 – 141PPR 2Add BLAST35
Repeati142 – 172PPR 3Add BLAST31
Repeati173 – 203PPR 4Add BLAST31
Repeati204 – 238PPR 5Add BLAST35
Repeati239 – 273PPR 6Add BLAST35
Repeati274 – 304PPR 7Add BLAST31
Repeati305 – 339PPR 8Add BLAST35
Repeati340 – 375PPR 9Add BLAST36
Repeati376 – 410PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni411 – 486Type E motifAdd BLAST76
Regioni487 – 517Type E(+) motifAdd BLAST31
Regioni518 – 612Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FND7.
OMAiLETANHG.
OrthoDBiEOG093606X7.
PhylomeDBiQ9FND7.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FND7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKHPAI ALLDSGITFK EVRQIHAKLY VDGTLKDDHL VGHFVKAVAL
60 70 80 90 100
SDHKYLDYAN QILDRSEKPT LFALNSMIRA HCKSPVPEKS FDFYRRILSS
110 120 130 140 150
GNDLKPDNYT VNFLVQACTG LRMRETGLQV HGMTIRRGFD NDPHVQTGLI
160 170 180 190 200
SLYAELGCLD SCHKVFNSIP CPDFVCRTAM VTACARCGDV VFARKLFEGM
210 220 230 240 250
PERDPIAWNA MISGYAQVGE SREALNVFHL MQLEGVKVNG VAMISVLSAC
260 270 280 290 300
TQLGALDQGR WAHSYIERNK IKITVRLATT LVDLYAKCGD MEKAMEVFWG
310 320 330 340 350
MEEKNVYTWS SALNGLAMNG FGEKCLELFS LMKQDGVTPN AVTFVSVLRG
360 370 380 390 400
CSVVGFVDEG QRHFDSMRNE FGIEPQLEHY GCLVDLYARA GRLEDAVSII
410 420 430 440 450
QQMPMKPHAA VWSSLLHASR MYKNLELGVL ASKKMLELET ANHGAYVLLS
460 470 480 490 500
NIYADSNDWD NVSHVRQSMK SKGVRKQPGC SVMEVNGEVH EFFVGDKSHP
510 520 530 540 550
KYTQIDAVWK DISRRLRLAG YKADTTPVMF DIDEEEKEDA LCLHSEKAAI
560 570 580 590 600
AFGIMSLKED VPIRIVKNLR VCGDCHQVSM MISKIFNREI IVRDRNRFHH
610
FKDGHCSCNG FW
Length:612
Mass (Da):68,871
Last modified:March 1, 2001 - v1
Checksum:iD31AC6D3D1F1C852
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006702 Genomic DNA. Translation: BAB11597.1.
CP002688 Genomic DNA. Translation: AED94544.1.
RefSeqiNP_001031987.1. NM_001036910.2.

Genome annotation databases

EnsemblPlantsiAT5G40405.1; AT5G40405.1; AT5G40405.
GeneIDi3771385.
GrameneiAT5G40405.1; AT5G40405.1; AT5G40405.
KEGGiath:AT5G40405.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006702 Genomic DNA. Translation: BAB11597.1.
CP002688 Genomic DNA. Translation: AED94544.1.
RefSeqiNP_001031987.1. NM_001036910.2.

3D structure databases

ProteinModelPortaliQ9FND7.
SMRiQ9FND7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G40405.1.

PTM databases

iPTMnetiQ9FND7.

Proteomic databases

PaxDbiQ9FND7.
PRIDEiQ9FND7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G40405.1; AT5G40405.1; AT5G40405.
GeneIDi3771385.
GrameneiAT5G40405.1; AT5G40405.1; AT5G40405.
KEGGiath:AT5G40405.

Organism-specific databases

TAIRiAT5G40405.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FND7.
OMAiLETANHG.
OrthoDBiEOG093606X7.
PhylomeDBiQ9FND7.

Miscellaneous databases

PROiQ9FND7.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP410_ARATH
AccessioniPrimary (citable) accession number: Q9FND7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.