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Protein

Transcription factor TCP7

Gene

TCP7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP7
Gene namesi
Name:TCP7
Ordered Locus Names:At5g23280
ORF Names:MKD15.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G23280.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 250250Transcription factor TCP7PRO_0000330781Add
BLAST

Proteomic databases

PaxDbiQ9FMX2.
PRIDEiQ9FMX2.

PTM databases

iPTMnetiQ9FMX2.

Interactioni

Protein-protein interaction databases

BioGridi17667. 6 interactions.
STRINGi3702.AT5G23280.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 9355TCPPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi4 – 1411Asn-richAdd
BLAST
Compositional biasi187 – 21024Gln-richAdd
BLAST

Sequence similaritiesi

Contains 1 TCP domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IJ38. Eukaryota.
ENOG410YHVM. LUCA.
HOGENOMiHOG000239283.
InParanoidiQ9FMX2.
OMAiGAPQEMF.
PhylomeDBiQ9FMX2.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FMX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG
60 70 80 90 100
RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
110 120 130 140 150
ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN
160 170 180 190 200
HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
210 220 230 240 250
LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Length:250
Mass (Da):27,061
Last modified:March 1, 2001 - v1
Checksum:iD26EC0DCC4D80813
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti33 – 331V → I in BAC43274 (PubMed:11910074).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007648 Genomic DNA. Translation: BAB11183.1.
CP002688 Genomic DNA. Translation: AED93147.1.
AK118679 mRNA. Translation: BAC43274.1.
RefSeqiNP_197719.1. NM_122234.2.
UniGeneiAt.31018.

Genome annotation databases

EnsemblPlantsiAT5G23280.1; AT5G23280.1; AT5G23280.
GeneIDi832392.
GrameneiAT5G23280.1; AT5G23280.1; AT5G23280.
KEGGiath:AT5G23280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007648 Genomic DNA. Translation: BAB11183.1.
CP002688 Genomic DNA. Translation: AED93147.1.
AK118679 mRNA. Translation: BAC43274.1.
RefSeqiNP_197719.1. NM_122234.2.
UniGeneiAt.31018.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17667. 6 interactions.
STRINGi3702.AT5G23280.1.

PTM databases

iPTMnetiQ9FMX2.

Proteomic databases

PaxDbiQ9FMX2.
PRIDEiQ9FMX2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G23280.1; AT5G23280.1; AT5G23280.
GeneIDi832392.
GrameneiAT5G23280.1; AT5G23280.1; AT5G23280.
KEGGiath:AT5G23280.

Organism-specific databases

TAIRiAT5G23280.

Phylogenomic databases

eggNOGiENOG410IJ38. Eukaryota.
ENOG410YHVM. LUCA.
HOGENOMiHOG000239283.
InParanoidiQ9FMX2.
OMAiGAPQEMF.
PhylomeDBiQ9FMX2.

Miscellaneous databases

PROiQ9FMX2.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones."
    Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 4:401-414(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds."
    Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.
    Plant Cell 19:458-472(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiTCP7_ARATH
AccessioniPrimary (citable) accession number: Q9FMX2
Secondary accession number(s): Q8GWR4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 1, 2001
Last modified: February 17, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.