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Protein

Transcription factor TCP7

Gene

TCP7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP7
Gene namesi
Name:TCP7
Ordered Locus Names:At5g23280
ORF Names:MKD15.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G23280.
TAIRilocus:2166796. AT5G23280.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003307811 – 250Transcription factor TCP7Add BLAST250

Proteomic databases

PaxDbiQ9FMX2.

PTM databases

iPTMnetiQ9FMX2.

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi17667. 6 interactors.
IntActiQ9FMX2. 108 interactors.
STRINGi3702.AT5G23280.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 93TCPPROSITE-ProRule annotationAdd BLAST55

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi4 – 14Asn-richAdd BLAST11
Compositional biasi187 – 210Gln-richAdd BLAST24

Phylogenomic databases

eggNOGiENOG410IJ38. Eukaryota.
ENOG410YHVM. LUCA.
HOGENOMiHOG000239283.
InParanoidiQ9FMX2.
OMAiGAPQEMF.
OrthoDBiEOG09360PY9.
PhylomeDBiQ9FMX2.

Family and domain databases

InterProiView protein in InterPro
IPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
PfamiView protein in Pfam
PF03634. TCP. 1 hit.
PROSITEiView protein in PROSITE
PS51369. TCP. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FMX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG
60 70 80 90 100
RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
110 120 130 140 150
ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN
160 170 180 190 200
HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
210 220 230 240 250
LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Length:250
Mass (Da):27,061
Last modified:March 1, 2001 - v1
Checksum:iD26EC0DCC4D80813
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti33V → I in BAC43274 (PubMed:11910074).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007648 Genomic DNA. Translation: BAB11183.1.
CP002688 Genomic DNA. Translation: AED93147.1.
AK118679 mRNA. Translation: BAC43274.1.
RefSeqiNP_197719.1. NM_122234.3.
UniGeneiAt.31018.

Genome annotation databases

EnsemblPlantsiAT5G23280.1; AT5G23280.1; AT5G23280.
GeneIDi832392.
GrameneiAT5G23280.1; AT5G23280.1; AT5G23280.
KEGGiath:AT5G23280.

Similar proteinsi

Entry informationi

Entry nameiTCP7_ARATH
AccessioniPrimary (citable) accession number: Q9FMX2
Secondary accession number(s): Q8GWR4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 1, 2001
Last modified: September 27, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names