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Protein

SWI/SNF complex component SNF12 homolog

Gene

At5g14170

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).By similarity

GO - Biological processi

  • chromatin modification Source: UniProtKB-KW
  • DNA repair Source: TAIR
  • regulation of flower development Source: TAIR
  • regulation of gene expression Source: TAIR
  • regulation of leaf development Source: TAIR
  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • response to UV-B Source: TAIR
  • root development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
SWI/SNF complex component SNF12 homolog
Gene namesi
Ordered Locus Names:At5g14170
ORF Names:MUA22.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G14170.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 534534SWI/SNF complex component SNF12 homologPRO_0000220617Add
BLAST

Proteomic databases

PaxDbiQ9FMT4.
PRIDEiQ9FMT4.

PTM databases

iPTMnetiQ9FMT4.

Expressioni

Gene expression databases

GenevisibleiQ9FMT4. AT.

Interactioni

Subunit structurei

Part of a SWI-SNF complex.By similarity

Protein-protein interaction databases

BioGridi16545. 12 interactions.
IntActiQ9FMT4. 7 interactions.
STRINGi3702.AT5G14170.1.

Structurei

Secondary structure

1
534
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi323 – 3286Combined sources
Beta strandi332 – 3343Combined sources
Helixi337 – 34913Combined sources
Beta strandi358 – 3625Combined sources
Helixi366 – 3705Combined sources
Beta strandi373 – 3775Combined sources
Turni378 – 3814Combined sources
Helixi382 – 3887Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V31NMR-A315-394[»]
ProteinModelPortaliQ9FMT4.
SMRiQ9FMT4. Positions 315-389.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9FMT4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini315 – 39076SWIBAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi4 – 74Poly-Asn
Compositional biasi33 – 8452Gln-richAdd
BLAST
Compositional biasi391 – 3944Poly-Pro
Compositional biasi459 – 4624Poly-Arg

Sequence similaritiesi

Belongs to the SMARCD family.Curated
Contains 1 SWIB domain.Curated

Phylogenomic databases

eggNOGiKOG2570. Eukaryota.
COG5531. LUCA.
HOGENOMiHOG000240746.
InParanoidiQ9FMT4.
KOiK11650.
OMAiVQQQNRN.
PhylomeDBiQ9FMT4.

Family and domain databases

Gene3Di1.10.245.10. 1 hit.
InterProiIPR019835. SWIB_domain.
IPR003121. SWIB_MDM2_domain.
[Graphical view]
PfamiPF02201. SWIB. 1 hit.
[Graphical view]
SMARTiSM00151. SWIB. 1 hit.
[Graphical view]
SUPFAMiSSF47592. SSF47592. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FMT4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF
60 70 80 90 100
SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
110 120 130 140 150
TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK
160 170 180 190 200
SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
210 220 230 240 250
LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK
260 270 280 290 300
ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
310 320 330 340 350
NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR
360 370 380 390 400
KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
410 420 430 440 450
IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA
460 470 480 490 500
AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
510 520 530
ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
Length:534
Mass (Da):59,271
Last modified:March 1, 2001 - v1
Checksum:i4231FF2324C18D9D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007650 Genomic DNA. Translation: BAB08296.1.
CP002688 Genomic DNA. Translation: AED91995.1.
BT008892 mRNA. Translation: AAP68331.1.
AY065106 mRNA. Translation: AAL38282.1.
RefSeqiNP_196921.1. NM_121421.3.
UniGeneiAt.6512.

Genome annotation databases

EnsemblPlantsiAT5G14170.1; AT5G14170.1; AT5G14170.
GeneIDi831267.
GrameneiAT5G14170.1; AT5G14170.1; AT5G14170.
KEGGiath:AT5G14170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007650 Genomic DNA. Translation: BAB08296.1.
CP002688 Genomic DNA. Translation: AED91995.1.
BT008892 mRNA. Translation: AAP68331.1.
AY065106 mRNA. Translation: AAL38282.1.
RefSeqiNP_196921.1. NM_121421.3.
UniGeneiAt.6512.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V31NMR-A315-394[»]
ProteinModelPortaliQ9FMT4.
SMRiQ9FMT4. Positions 315-389.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi16545. 12 interactions.
IntActiQ9FMT4. 7 interactions.
STRINGi3702.AT5G14170.1.

PTM databases

iPTMnetiQ9FMT4.

Proteomic databases

PaxDbiQ9FMT4.
PRIDEiQ9FMT4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G14170.1; AT5G14170.1; AT5G14170.
GeneIDi831267.
GrameneiAT5G14170.1; AT5G14170.1; AT5G14170.
KEGGiath:AT5G14170.

Organism-specific databases

TAIRiAT5G14170.

Phylogenomic databases

eggNOGiKOG2570. Eukaryota.
COG5531. LUCA.
HOGENOMiHOG000240746.
InParanoidiQ9FMT4.
KOiK11650.
OMAiVQQQNRN.
PhylomeDBiQ9FMT4.

Miscellaneous databases

EvolutionaryTraceiQ9FMT4.
PROiQ9FMT4.

Gene expression databases

GenevisibleiQ9FMT4. AT.

Family and domain databases

Gene3Di1.10.245.10. 1 hit.
InterProiIPR019835. SWIB_domain.
IPR003121. SWIB_MDM2_domain.
[Graphical view]
PfamiPF02201. SWIB. 1 hit.
[Graphical view]
SMARTiSM00151. SWIB. 1 hit.
[Graphical view]
SUPFAMiSSF47592. SSF47592. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones."
    Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 4:401-414(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana."
    RIKEN structural genomics initiative (RSGI)
    Submitted (APR-2004) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 315-394.

Entry informationi

Entry nameiSNF12_ARATH
AccessioniPrimary (citable) accession number: Q9FMT4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: March 1, 2001
Last modified: July 6, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.