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Protein

Pentatricopeptide repeat-containing protein At5g56310

Gene

PCMP-E13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g56310
Gene namesi
Name:PCMP-E13
Ordered Locus Names:At5g56310
ORF Names:MCD7.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G56310
TAIRilocus:2161018 AT5G56310

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635701 – 530Pentatricopeptide repeat-containing protein At5g56310Add BLAST530

Proteomic databases

PaxDbiQ9FMA1
PRIDEiQ9FMA1

Expressioni

Gene expression databases

ExpressionAtlasiQ9FMA1 baseline and differential
GenevisibleiQ9FMA1 AT

Interactioni

Protein-protein interaction databases

BioGridi20974, 1 interactor
STRINGi3702.AT5G56310.1

Structurei

3D structure databases

ProteinModelPortaliQ9FMA1
SMRiQ9FMA1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati77 – 114PPR 1Add BLAST38
Repeati115 – 149PPR 2Add BLAST35
Repeati150 – 180PPR 3Add BLAST31
Repeati181 – 211PPR 4Add BLAST31
Repeati214 – 248PPR 5Add BLAST35
Repeati249 – 283PPR 6Add BLAST35
Repeati284 – 314PPR 7Add BLAST31
Repeati315 – 349PPR 8Add BLAST35
Repeati350 – 380PPR 9Add BLAST31
Repeati386 – 420PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni421 – 496Type E motifAdd BLAST76
Regioni497 – 527Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9FMA1
OMAiLLEMMPC
OrthoDBiEOG093607BS
PhylomeDBiQ9FMA1

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Q9FMA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIQRINALSL SSGLNWFVTS LKIHGNNLKT LKQSHCYMII TGLNRDNLNV
60 70 80 90 100
AKFIEACSNA GHLRYAYSVF THQPCPNTYL HNTMIRALSL LDEPNAHSIA
110 120 130 140 150
ITVYRKLWAL CAKPDTFTFP FVLKIAVRVS DVWFGRQIHG QVVVFGFDSS
160 170 180 190 200
VHVVTGLIQM YFSCGGLGDA RKMFDEMLVK DVNVWNALLA GYGKVGEMDE
210 220 230 240 250
ARSLLEMMPC WVRNEVSWTC VISGYAKSGR ASEAIEVFQR MLMENVEPDE
260 270 280 290 300
VTLLAVLSAC ADLGSLELGE RICSYVDHRG MNRAVSLNNA VIDMYAKSGN
310 320 330 340 350
ITKALDVFEC VNERNVVTWT TIIAGLATHG HGAEALAMFN RMVKAGVRPN
360 370 380 390 400
DVTFIAILSA CSHVGWVDLG KRLFNSMRSK YGIHPNIEHY GCMIDLLGRA
410 420 430 440 450
GKLREADEVI KSMPFKANAA IWGSLLAASN VHHDLELGER ALSELIKLEP
460 470 480 490 500
NNSGNYMLLA NLYSNLGRWD ESRMMRNMMK GIGVKKMAGE SSIEVENRVY
510 520 530
KFISGDLTHP QVERIHEILQ EMDLQIQSKV
Length:530
Mass (Da):59,191
Last modified:March 1, 2001 - v1
Checksum:i5DBC1A4E3A57C8E5
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti1M → T in AK229016 (Ref. 3) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009049 Genomic DNA Translation: BAB11258.1
CP002688 Genomic DNA Translation: AED96747.1
AK229016 mRNA No translation available.
RefSeqiNP_200442.1, NM_125014.5
UniGeneiAt.70454

Genome annotation databases

EnsemblPlantsiAT5G56310.1; AT5G56310.1; AT5G56310
GeneIDi835730
GrameneiAT5G56310.1; AT5G56310.1; AT5G56310
KEGGiath:AT5G56310

Similar proteinsi

Entry informationi

Entry nameiPP433_ARATH
AccessioniPrimary (citable) accession number: Q9FMA1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health