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Protein

Pentatricopeptide repeat-containing protein At5g56310

Gene

PCMP-E13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g56310
Gene namesi
Name:PCMP-E13
Ordered Locus Names:At5g56310
ORF Names:MCD7.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G56310.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 530530Pentatricopeptide repeat-containing protein At5g56310PRO_0000363570Add
BLAST

Proteomic databases

PaxDbiQ9FMA1.
PRIDEiQ9FMA1.

Expressioni

Gene expression databases

GenevisibleiQ9FMA1. AT.

Interactioni

Protein-protein interaction databases

BioGridi20974. 1 interaction.
STRINGi3702.AT5G56310.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FMA1.
SMRiQ9FMA1. Positions 38-487.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati77 – 11438PPR 1Add
BLAST
Repeati115 – 14935PPR 2Add
BLAST
Repeati150 – 18031PPR 3Add
BLAST
Repeati181 – 21131PPR 4Add
BLAST
Repeati214 – 24835PPR 5Add
BLAST
Repeati249 – 28335PPR 6Add
BLAST
Repeati284 – 31431PPR 7Add
BLAST
Repeati315 – 34935PPR 8Add
BLAST
Repeati350 – 38031PPR 9Add
BLAST
Repeati386 – 42035PPR 10Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni421 – 49676Type E motifAdd
BLAST
Regioni497 – 52731Type E(+) motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FMA1.
OMAiMLMENVE.
OrthoDBiEOG093607BS.
PhylomeDBiQ9FMA1.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 5 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FMA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIQRINALSL SSGLNWFVTS LKIHGNNLKT LKQSHCYMII TGLNRDNLNV
60 70 80 90 100
AKFIEACSNA GHLRYAYSVF THQPCPNTYL HNTMIRALSL LDEPNAHSIA
110 120 130 140 150
ITVYRKLWAL CAKPDTFTFP FVLKIAVRVS DVWFGRQIHG QVVVFGFDSS
160 170 180 190 200
VHVVTGLIQM YFSCGGLGDA RKMFDEMLVK DVNVWNALLA GYGKVGEMDE
210 220 230 240 250
ARSLLEMMPC WVRNEVSWTC VISGYAKSGR ASEAIEVFQR MLMENVEPDE
260 270 280 290 300
VTLLAVLSAC ADLGSLELGE RICSYVDHRG MNRAVSLNNA VIDMYAKSGN
310 320 330 340 350
ITKALDVFEC VNERNVVTWT TIIAGLATHG HGAEALAMFN RMVKAGVRPN
360 370 380 390 400
DVTFIAILSA CSHVGWVDLG KRLFNSMRSK YGIHPNIEHY GCMIDLLGRA
410 420 430 440 450
GKLREADEVI KSMPFKANAA IWGSLLAASN VHHDLELGER ALSELIKLEP
460 470 480 490 500
NNSGNYMLLA NLYSNLGRWD ESRMMRNMMK GIGVKKMAGE SSIEVENRVY
510 520 530
KFISGDLTHP QVERIHEILQ EMDLQIQSKV
Length:530
Mass (Da):59,191
Last modified:March 1, 2001 - v1
Checksum:i5DBC1A4E3A57C8E5
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti1 – 11M → T in AK229016 (Ref. 3) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009049 Genomic DNA. Translation: BAB11258.1.
CP002688 Genomic DNA. Translation: AED96747.1.
AK229016 mRNA. No translation available.
RefSeqiNP_200442.1. NM_125014.4.
UniGeneiAt.70454.

Genome annotation databases

EnsemblPlantsiAT5G56310.1; AT5G56310.1; AT5G56310.
GeneIDi835730.
GrameneiAT5G56310.1; AT5G56310.1; AT5G56310.
KEGGiath:AT5G56310.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009049 Genomic DNA. Translation: BAB11258.1.
CP002688 Genomic DNA. Translation: AED96747.1.
AK229016 mRNA. No translation available.
RefSeqiNP_200442.1. NM_125014.4.
UniGeneiAt.70454.

3D structure databases

ProteinModelPortaliQ9FMA1.
SMRiQ9FMA1. Positions 38-487.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi20974. 1 interaction.
STRINGi3702.AT5G56310.1.

Proteomic databases

PaxDbiQ9FMA1.
PRIDEiQ9FMA1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G56310.1; AT5G56310.1; AT5G56310.
GeneIDi835730.
GrameneiAT5G56310.1; AT5G56310.1; AT5G56310.
KEGGiath:AT5G56310.

Organism-specific databases

TAIRiAT5G56310.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FMA1.
OMAiMLMENVE.
OrthoDBiEOG093607BS.
PhylomeDBiQ9FMA1.

Miscellaneous databases

PROiQ9FMA1.

Gene expression databases

GenevisibleiQ9FMA1. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 5 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP433_ARATH
AccessioniPrimary (citable) accession number: Q9FMA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.