Unreviewed, UniProtKB/TrEMBL Q9FM69 (Q9FM69_ARATH)

Names and origin

Protein names

Submitted name:
    At5g55690 EMBL ABG48398.1
Submitted name:
    Genomic DNA, chromosome 5, P1 clone:MDF20 EMBL BAB09236.1
    MADS-box protein AGL47 EMBL AAN52778.1

Gene names

Ordered Locus Names:

At5g55690 TAIR At5g55690

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	277 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Subcellular location	Nucleus By similarity. RuleBase RU000476V3
Sequence similarities	Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002100

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000476V3 Spearmint SPM002100
Cellular component	Nucleus RuleBase RU000476V3 Spearmint SPM002100
Ligand	DNA-binding RuleBase RU000476V3 Spearmint SPM002100
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9FM69-1 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: 122A6008FC505BE5	FASTA	277	31,700
	10 20 30 40 50 60 MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME 70 80 90 100 110 120 PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN TKVEKPTIAT KYPTWDKKLD 130 140 150 160 170 180 QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM 190 200 210 220 230 240 DYNGLSFFPF NNQMTSNTAE VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP 250 260 270 IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

References

[1]	"Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones." Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N., Tabata S. DNA Res. 5:41-54(1998) [PubMed: 9628582] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Arabidopsis ORF clones." Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world." Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C., Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C., Colombo L. Plant Cell 15:1538-1551(2003) [PubMed: 12837945] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Inflorescence EMBL AAN52778.1.
[4]	Folter S. de, Busscher-Lange J., Angenent G. Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Inflorescence EMBL AAN52778.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AY141214 mRNA. Translation: AAN52778.1. BT026042 mRNA. Translation: ABG48398.1. AB009050 Genomic DNA. Translation: BAB09236.1.
IPI	IPI00516331.
RefSeq	NP_200380.1.
UniGene	At.64303
3D structure databases
HSSP	HSSP built from PDB template 1EGW based on UniProtKB Q02078.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9FM69. 2 interactions.
Genome annotation databases
GeneID	835663.
GenomeReviews	Gene locus AT5G55690 in contig BA000015_GR.
KEGG	ath:AT5G55690.
NMPDR	fig|3702.1.peg.27498.
Organism-specific databases
TAIR	At5g55690.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
PRINTS	PR00404. MADSDOMAIN.
SMART	SM00432. MADS. 1 hit. [Graphical view]
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9FM69_ARATH

Accession

Primary (citable) accession number: Q9FM69

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2001
Last modified:	April 14, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)