Q9FM41 (DGP13_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative protease Do-like 13
EC=3.4.21.-

Gene names

Name:	DEGP13
Ordered Locus Names:	At5g40560
ORF Names:	MNF13.8

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	486 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Putative serine protease.
Sequence similarities	Belongs to the peptidase S1B family. Contains 1 PDZ (DHR) domain.
Sequence caution	The sequence AED94564.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Ontologies

Keywords
Molecular function	Hydrolase Protease Serine protease
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	proteolysis Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	serine-type endopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 486	486	Putative protease Do-like 13		PRO_0000093864
Regions
	Domain	241 – 334	94	PDZ
	Region	44 – 229	186	Serine protease
Sites
	Active site	83	1	Charge relay system Potential
	Active site	114	1	Charge relay system Potential
	Active site	192	1	Charge relay system Potential

Sequences

	Sequence		Length	Mass (Da)
	Q9FM41 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: 8740A6560B1326F4	FASTA	486	54,150
	10 20 30 40 50 60 MIQLNEPLTH VRTKPILISL EFESPGRKTI DSVATESVLN SVVKINTFSS KPNICYPWQN 70 80 90 100 110 120 KPQKKSKGSG FVIPGKMIIT NAHVVANHIL VLVIKRGSPK KYKAEVKAIG RECDLAILVI 130 140 150 160 170 180 ESKEFWEDMN PLELGDMPFL QESVNVIGYP TGGENISVTK GVVSRIESMD YAHGAINLPA 190 200 210 220 230 240 IQTDAAMNPG NSGGPVCIGN KVVGVAFQTL GHSNNIGCLI PAPVVKHFIT GVEKTGQYVG 250 260 270 280 290 300 FCSLNLSYQH MDAQTRSHFK MNSEMTGILI YNINQHSDAL NILKKYDVIL SIDGVAIEND 310 320 330 340 350 360 GTVIIPNRER TRLDDLVSLK QLGETILLKI LREGKMHEFN ITLRPVQRLV PAGQIDNNPS 370 380 390 400 410 420 YYIFAGFVFV PLRKQHFKGS NGEQIVVISE VLADVINVEY YMYKHLKVNS VNKVKVENLK 430 440 450 460 470 480 HLCELIEKCC TKDLRLELGD GRVIILDYQF AKSSTSLILE RHRVPWAMSK DLMTDQSTTC SSTRLY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones." Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N., Tabata S. DNA Res. 5:41-54(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature." Adam Z., Adamska I., Nakabayashi K., Ostersetzer O., Haussuhl K., Manuell A., Zheng B., Vallon O., Rodermel S.R., Shinozaki K., Clarke A.K. Plant Physiol. 125:1912-1918(2001) [PubMed] [Europe PMC] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB009052 Genomic DNA. Translation: BAB08526.1. CP002688 Genomic DNA. Translation: AED94564.1. Different initiation.
IPI	IPI00537004. IPI01020480.
RefSeq	NP_568583.1. NM_123420.1.
UniGene	At.55278.
3D structure databases
ProteinModelPortal	Q9FM41.
SMR	Q9FM41. Positions 37-473.
ModBase	Search...
Protein-protein interaction databases
STRING	3702.AT5G40560.1-P.
Protein family/group databases
MEROPS	S01.A06.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	834054.
KEGG	ath:AT5G40560.
Organism-specific databases
GeneFarm	2274. 199.
TAIR	At5g40560.
Phylogenomic databases
eggNOG	COG0265.
HOGENOM	HOG000239474.
InParanoid	Q9FM41.
PhylomeDB	Q9FM41.
Gene expression databases
ArrayExpress	Q9FM41.
Genevestigator	Q9FM41.
GermOnline	AT5G40560. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR001478. PDZ. IPR015724. Pept_DepP2. IPR001254. Peptidase_S1. IPR001940. Peptidase_S1C. IPR009003. Trypsin-like_Pept_dom. [Graphical view]
PANTHER	PTHR22939:SF1. PTHR22939:SF1. 1 hit.
Pfam	PF13180. PDZ_2. 1 hit. PF00089. Trypsin. 1 hit. [Graphical view]
PRINTS	PR00834. PROTEASES2C.
SUPFAM	SSF50156. PDZ. 1 hit. SSF50494. Pept_Ser_Cys. 1 hit.
PROSITE	PS50106. PDZ. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DGP13_ARATH

Accession

Primary (citable) accession number: Q9FM41
Secondary accession number(s): F4KHF0

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 24, 2006
Last sequence update:	March 1, 2001
Last modified:	May 1, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program