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Protein

Dof zinc finger protein DOF5.6

Gene

DOF5.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri73 – 127Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • phloem or xylem histogenesis Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • procambium histogenesis Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF5.6
Short name:
AtDOF5.6
Gene namesi
Name:DOF5.6
Ordered Locus Names:At5g62940
ORF Names:MQB2.26
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G62940.
TAIRilocus:2170753. AT5G62940.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742961 – 372Dof zinc finger protein DOF5.6Add BLAST372

Proteomic databases

PaxDbiQ9FM03.
PRIDEiQ9FM03.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FM03. baseline and differential.
GenevisibleiQ9FM03. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G62940.1.

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi48 – 57Poly-Ala10
Compositional biasi129 – 139Poly-SerAdd BLAST11
Compositional biasi220 – 270Asn-richAdd BLAST51
Compositional biasi328 – 363Gly-richAdd BLAST36

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri73 – 127Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IWJ5. Eukaryota.
ENOG410YEQW. LUCA.
HOGENOMiHOG000239394.
InParanoidiQ9FM03.
OMAiNGAYLMD.
OrthoDBiEOG09360KAV.
PhylomeDBiQ9FM03.

Family and domain databases

InterProiView protein in InterPro
IPR003851. Znf_Dof.
PfamiView protein in Pfam
PF02701. zf-Dof. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD007478. Znf_Dof. 1 hit.
PROSITEiView protein in PROSITE
PS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FM03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA
60 70 80 90 100
VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
110 120 130 140 150
KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN
160 170 180 190 200
TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
210 220 230 240 250
SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG
260 270 280 290 300
LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
310 320 330 340 350
RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING
360 370
LGSSWNGLMN GYGTSTKTNS LV
Length:372
Mass (Da):39,801
Last modified:November 9, 2004 - v2
Checksum:i5F17251324E04E6E
GO

Sequence cautioni

The sequence BAB10863 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009053 Genomic DNA. Translation: BAB10863.1. Different initiation.
CP002688 Genomic DNA. Translation: AED97676.1.
BT020467 mRNA. Translation: AAW38968.1.
BT020576 mRNA. Translation: AAW78595.1.
RefSeqiNP_201099.1. NM_125688.3.
UniGeneiAt.29026.

Genome annotation databases

EnsemblPlantsiAT5G62940.1; AT5G62940.1; AT5G62940.
GeneIDi836414.
GrameneiAT5G62940.1; AT5G62940.1; AT5G62940.
KEGGiath:AT5G62940.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiDOF56_ARATH
AccessioniPrimary (citable) accession number: Q9FM03
Secondary accession number(s): Q5HZ57
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: November 9, 2004
Last modified: June 7, 2017
This is version 92 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names