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Protein

Dof zinc finger protein DOF5.6

Gene

DOF5.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri73 – 12755Dof-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • phloem or xylem histogenesis Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • procambium histogenesis Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF5.6
Short name:
AtDOF5.6
Gene namesi
Name:DOF5.6
Ordered Locus Names:At5g62940
ORF Names:MQB2.26
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G62940.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 372372Dof zinc finger protein DOF5.6PRO_0000074296Add
BLAST

Proteomic databases

PaxDbiQ9FM03.
PRIDEiQ9FM03.

Expressioni

Gene expression databases

GenevisibleiQ9FM03. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G62940.1.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi48 – 5710Poly-Ala
Compositional biasi129 – 13911Poly-SerAdd
BLAST
Compositional biasi220 – 27051Asn-richAdd
BLAST
Compositional biasi328 – 36336Gly-richAdd
BLAST

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri73 – 12755Dof-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IWJ5. Eukaryota.
ENOG410YEQW. LUCA.
HOGENOMiHOG000239394.
InParanoidiQ9FM03.
OMAiPIDFMDS.
PhylomeDBiQ9FM03.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FM03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA
60 70 80 90 100
VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
110 120 130 140 150
KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN
160 170 180 190 200
TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
210 220 230 240 250
SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG
260 270 280 290 300
LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
310 320 330 340 350
RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING
360 370
LGSSWNGLMN GYGTSTKTNS LV
Length:372
Mass (Da):39,801
Last modified:November 9, 2004 - v2
Checksum:i5F17251324E04E6E
GO

Sequence cautioni

The sequence BAB10863.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009053 Genomic DNA. Translation: BAB10863.1. Different initiation.
CP002688 Genomic DNA. Translation: AED97676.1.
BT020467 mRNA. Translation: AAW38968.1.
BT020576 mRNA. Translation: AAW78595.1.
RefSeqiNP_201099.1. NM_125688.2.
UniGeneiAt.29026.

Genome annotation databases

EnsemblPlantsiAT5G62940.1; AT5G62940.1; AT5G62940.
GeneIDi836414.
GrameneiAT5G62940.1; AT5G62940.1; AT5G62940.
KEGGiath:AT5G62940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009053 Genomic DNA. Translation: BAB10863.1. Different initiation.
CP002688 Genomic DNA. Translation: AED97676.1.
BT020467 mRNA. Translation: AAW38968.1.
BT020576 mRNA. Translation: AAW78595.1.
RefSeqiNP_201099.1. NM_125688.2.
UniGeneiAt.29026.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G62940.1.

Proteomic databases

PaxDbiQ9FM03.
PRIDEiQ9FM03.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G62940.1; AT5G62940.1; AT5G62940.
GeneIDi836414.
GrameneiAT5G62940.1; AT5G62940.1; AT5G62940.
KEGGiath:AT5G62940.

Organism-specific databases

TAIRiAT5G62940.

Phylogenomic databases

eggNOGiENOG410IWJ5. Eukaryota.
ENOG410YEQW. LUCA.
HOGENOMiHOG000239394.
InParanoidiQ9FM03.
OMAiPIDFMDS.
PhylomeDBiQ9FM03.

Miscellaneous databases

PROiQ9FM03.

Gene expression databases

GenevisibleiQ9FM03. AT.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones."
    Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 5:41-54(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "The Dof family of plant transcription factors."
    Yanagisawa S.
    Trends Plant Sci. 7:555-560(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiDOF56_ARATH
AccessioniPrimary (citable) accession number: Q9FM03
Secondary accession number(s): Q5HZ57
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: November 9, 2004
Last modified: February 17, 2016
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.