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Protein

Probable WRKY transcription factor 27

Gene

WRKY27

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi159 – 225WRKYPROSITE-ProRule annotationAdd BLAST67

GO - Molecular functioni

  • sequence-specific DNA binding Source: InterPro
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: CACAO

GO - Biological processi

  • defense response to bacterium Source: TAIR
  • negative regulation of transcription, DNA-templated Source: TAIR
  • nitric oxide mediated signal transduction Source: TAIR
  • response to gibberellin Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 27
Alternative name(s):
WRKY DNA-binding protein 27
Gene namesi
Name:WRKY27
Ordered Locus Names:At5g52830
ORF Names:MXC20.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G52830.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001336691 – 348Probable WRKY transcription factor 27Add BLAST348

Proteomic databases

PaxDbiQ9FLX8.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FLX8. baseline and differential.
GenevisibleiQ9FLX8. AT.

Interactioni

Protein-protein interaction databases

BioGridi20605. 5 interactors.
IntActiQ9FLX8. 1 interactor.
STRINGi3702.AT5G52830.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FLX8.
SMRiQ9FLX8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi67 – 73Poly-Thr7
Compositional biasi277 – 308Glu-richAdd BLAST32
Compositional biasi309 – 315Poly-Asp7

Sequence similaritiesi

Belongs to the WRKY group II-e family.Curated
Contains 1 WRKY DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JCX9. Eukaryota.
ENOG41114CW. LUCA.
HOGENOMiHOG000241620.
InParanoidiQ9FLX8.
OMAiKRTICHV.
OrthoDBiEOG09360OGN.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FLX8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEDWDLFA VVRSCSSSVS TTNSCAGHED DIGNCKQQQD PPPPPLFQAS
60 70 80 90 100
SSCNELQDSC KPFLPVTTTT TTTWSPPPLL PPPKASSPSP NILLKQEQVL
110 120 130 140 150
LESQDQKPPL SVRVFPPSTS SSVFVFRGQR DQLLQQQSQP PLRSRKRKNQ
160 170 180 190 200
QKRTICHVTQ ENLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSSKGCLARK
210 220 230 240 250
QVERSNLDPN IFIVTYTGEH THPRPTHRNS LAGSTRNKSQ PVNPVPKPDT
260 270 280 290 300
SPLSDTVKEE IHLSPTTPLK GNDDVQETNG DEDMVGQEVN MEEEEEEEEV
310 320 330 340
EEDDEEEEDD DDVDDLLIPN LAVRDRDDLF FAGSFPSWSA GSAGDGGG
Length:348
Mass (Da):38,722
Last modified:March 1, 2001 - v1
Checksum:i30CE7C7D46D8D3BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF418310 mRNA. Translation: AAL13041.1.
AB009055 Genomic DNA. Translation: BAB10431.1.
CP002688 Genomic DNA. Translation: AED96266.1.
RefSeqiNP_568777.1. NM_124661.3.
UniGeneiAt.26285.

Genome annotation databases

EnsemblPlantsiAT5G52830.1; AT5G52830.1; AT5G52830.
GeneIDi835360.
GrameneiAT5G52830.1; AT5G52830.1; AT5G52830.
KEGGiath:AT5G52830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF418310 mRNA. Translation: AAL13041.1.
AB009055 Genomic DNA. Translation: BAB10431.1.
CP002688 Genomic DNA. Translation: AED96266.1.
RefSeqiNP_568777.1. NM_124661.3.
UniGeneiAt.26285.

3D structure databases

ProteinModelPortaliQ9FLX8.
SMRiQ9FLX8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi20605. 5 interactors.
IntActiQ9FLX8. 1 interactor.
STRINGi3702.AT5G52830.1.

Proteomic databases

PaxDbiQ9FLX8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G52830.1; AT5G52830.1; AT5G52830.
GeneIDi835360.
GrameneiAT5G52830.1; AT5G52830.1; AT5G52830.
KEGGiath:AT5G52830.

Organism-specific databases

TAIRiAT5G52830.

Phylogenomic databases

eggNOGiENOG410JCX9. Eukaryota.
ENOG41114CW. LUCA.
HOGENOMiHOG000241620.
InParanoidiQ9FLX8.
OMAiKRTICHV.
OrthoDBiEOG09360OGN.

Miscellaneous databases

PROiQ9FLX8.

Gene expression databases

ExpressionAtlasiQ9FLX8. baseline and differential.
GenevisibleiQ9FLX8. AT.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiWRK27_ARATH
AccessioniPrimary (citable) accession number: Q9FLX8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 11, 2003
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.