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Protein

Transcription factor TCP6

Gene

TCP6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP6
Gene namesi
Name:TCP6
Ordered Locus Names:At5g41030
ORF Names:MEE6.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G41030
TAIRilocus:2163081 AT5G41030

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003307801 – 243Transcription factor TCP6Add BLAST243

Proteomic databases

PaxDbiQ9FLM6

Expressioni

Gene expression databases

ExpressionAtlasiQ9FLM6 baseline and differential

Interactioni

Subunit structurei

Interacts with SPL.1 Publication

Protein-protein interaction databases

BioGridi19356, 1 interactor
IntActiQ9FLM6, 10 interactors
STRINGi3702.AT5G41030.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 122TCPPROSITE-ProRule annotationAdd BLAST55

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili42 – 66Sequence analysisAdd BLAST25

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410JVWU Eukaryota
ENOG41105HE LUCA
HOGENOMiHOG000070851
InParanoidiQ9FLM6
OMAiCAARIYQ
OrthoDBiEOG09360ONE
PhylomeDBiQ9FLM6

Family and domain databases

InterProiView protein in InterPro
IPR017887 TF_TCP_subgr
IPR005333 Transcription_factor_TCP
PfamiView protein in Pfam
PF03634 TCP, 1 hit
PROSITEiView protein in PROSITE
PS51369 TCP, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FLM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE
60 70 80 90 100
EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
110 120 130 140 150
HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE
160 170 180 190 200
EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
210 220 230 240
ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
Length:243
Mass (Da):27,618
Last modified:March 1, 2001 - v1
Checksum:iE038DCF31A45B90D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010072 Genomic DNA Translation: BAB09705.1
CP002688 Genomic DNA Translation: AED94627.1
DR750813 mRNA No translation available.
DR750814 mRNA No translation available.
RefSeqiNP_198919.1, NM_123468.2
UniGeneiAt.55287

Genome annotation databases

EnsemblPlantsiAT5G41030.1; AT5G41030.1; AT5G41030
GeneIDi834105
GrameneiAT5G41030.1; AT5G41030.1; AT5G41030
KEGGiath:AT5G41030

Similar proteinsi

Entry informationi

Entry nameiTCP6_ARATH
AccessioniPrimary (citable) accession number: Q9FLM6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health