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Protein

Transcription factor TCP6

Gene

TCP6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP6
Gene namesi
Name:TCP6
Ordered Locus Names:At5g41030
ORF Names:MEE6.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G41030.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 243243Transcription factor TCP6PRO_0000330780Add
BLAST

Proteomic databases

PaxDbiQ9FLM6.
PRIDEiQ9FLM6.

Interactioni

Subunit structurei

Interacts with SPL.1 Publication

Protein-protein interaction databases

BioGridi19356. 1 interaction.
STRINGi3702.AT5G41030.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini68 – 12255TCPPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili42 – 6625Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 TCP domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410JVWU. Eukaryota.
ENOG41105HE. LUCA.
HOGENOMiHOG000070851.
InParanoidiQ9FLM6.
OMAiCAARIYQ.
PhylomeDBiQ9FLM6.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FLM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE
60 70 80 90 100
EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
110 120 130 140 150
HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE
160 170 180 190 200
EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
210 220 230 240
ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
Length:243
Mass (Da):27,618
Last modified:March 1, 2001 - v1
Checksum:iE038DCF31A45B90D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010072 Genomic DNA. Translation: BAB09705.1.
CP002688 Genomic DNA. Translation: AED94627.1.
DR750813 mRNA. No translation available.
DR750814 mRNA. No translation available.
RefSeqiNP_198919.1. NM_123468.1.
UniGeneiAt.55287.

Genome annotation databases

EnsemblPlantsiAT5G41030.1; AT5G41030.1; AT5G41030.
GeneIDi834105.
GrameneiAT5G41030.1; AT5G41030.1; AT5G41030.
KEGGiath:AT5G41030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010072 Genomic DNA. Translation: BAB09705.1.
CP002688 Genomic DNA. Translation: AED94627.1.
DR750813 mRNA. No translation available.
DR750814 mRNA. No translation available.
RefSeqiNP_198919.1. NM_123468.1.
UniGeneiAt.55287.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi19356. 1 interaction.
STRINGi3702.AT5G41030.1.

Proteomic databases

PaxDbiQ9FLM6.
PRIDEiQ9FLM6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G41030.1; AT5G41030.1; AT5G41030.
GeneIDi834105.
GrameneiAT5G41030.1; AT5G41030.1; AT5G41030.
KEGGiath:AT5G41030.

Organism-specific databases

TAIRiAT5G41030.

Phylogenomic databases

eggNOGiENOG410JVWU. Eukaryota.
ENOG41105HE. LUCA.
HOGENOMiHOG000070851.
InParanoidiQ9FLM6.
OMAiCAARIYQ.
PhylomeDBiQ9FLM6.

Miscellaneous databases

PROiQ9FLM6.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones."
    Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 5:41-54(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds."
    Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.
    Plant Cell 19:458-472(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  5. "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis."
    Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.
    J. Genet. Genomics 41:617-625(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH SPL.

Entry informationi

Entry nameiTCP6_ARATH
AccessioniPrimary (citable) accession number: Q9FLM6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 1, 2001
Last modified: April 13, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.