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Protein

Pentatricopeptide repeat-containing protein At5g41170, mitochondrial

Gene

At5g41170

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g41170, mitochondrial
Gene namesi
Ordered Locus Names:At5g41170
ORF Names:MEE6.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G41170.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 3535MitochondrionSequence analysisAdd
BLAST
Chaini36 – 527492Pentatricopeptide repeat-containing protein At5g41170, mitochondrialPRO_0000363549Add
BLAST

Proteomic databases

PaxDbiQ9FLL3.
PRIDEiQ9FLL3.

Expressioni

Gene expression databases

GenevisibleiQ9FLL3. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G41170.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FLL3.
SMRiQ9FLL3. Positions 48-527.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati36 – 7035PPR 1Add
BLAST
Repeati71 – 10535PPR 2Add
BLAST
Repeati106 – 14035PPR 3Add
BLAST
Repeati141 – 17535PPR 4Add
BLAST
Repeati176 – 21035PPR 5Add
BLAST
Repeati211 – 24535PPR 6Add
BLAST
Repeati246 – 28035PPR 7Add
BLAST
Repeati281 – 31535PPR 8Add
BLAST
Repeati316 – 35035PPR 9Add
BLAST
Repeati351 – 38535PPR 10Add
BLAST
Repeati386 – 42035PPR 11Add
BLAST
Repeati424 – 45835PPR 12Add
BLAST
Repeati459 – 49335PPR 13Add
BLAST
Repeati494 – 52734PPR 14Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 14 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9FLL3.
OMAiVPPNIRT.
OrthoDBiEOG093606HI.
PhylomeDBiQ9FLL3.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 12 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FLL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMRFFQLHR NRLVKGNSGK ALSFSRLLDL SFWVRAFCNY REILRNGLHS
60 70 80 90 100
LQFNEALDLF THMVESRPLP SIIDFTKLLN VIAKMKKFDV VINLCDHLQI
110 120 130 140 150
MGVSHDLYTC NLLMNCFCQS SQPYLASSFL GKMMKLGFEP DIVTFTSLIN
160 170 180 190 200
GFCLGNRMEE AMSMVNQMVE MGIKPDVVMY TTIIDSLCKN GHVNYALSLF
210 220 230 240 250
DQMENYGIRP DVVMYTSLVN GLCNSGRWRD ADSLLRGMTK RKIKPDVITF
260 270 280 290 300
NALIDAFVKE GKFLDAEELY NEMIRMSIAP NIFTYTSLIN GFCMEGCVDE
310 320 330 340 350
ARQMFYLMET KGCFPDVVAY TSLINGFCKC KKVDDAMKIF YEMSQKGLTG
360 370 380 390 400
NTITYTTLIQ GFGQVGKPNV AQEVFSHMVS RGVPPNIRTY NVLLHCLCYN
410 420 430 440 450
GKVKKALMIF EDMQKREMDG VAPNIWTYNV LLHGLCYNGK LEKALMVFED
460 470 480 490 500
MRKREMDIGI ITYTIIIQGM CKAGKVKNAV NLFCSLPSKG VKPNVVTYTT
510 520
MISGLFREGL KHEAHVLFRK MKEDGVS
Length:527
Mass (Da):59,961
Last modified:March 1, 2001 - v1
Checksum:iDFFC3644051ED7C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010072 Genomic DNA. Translation: BAB09719.1.
CP002688 Genomic DNA. Translation: AED94650.1.
BT023465 mRNA. Translation: AAY56456.1.
RefSeqiNP_198933.1. NM_123482.3.
UniGeneiAt.49775.

Genome annotation databases

EnsemblPlantsiAT5G41170.1; AT5G41170.1; AT5G41170.
GeneIDi834119.
GrameneiAT5G41170.1; AT5G41170.1; AT5G41170.
KEGGiath:AT5G41170.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010072 Genomic DNA. Translation: BAB09719.1.
CP002688 Genomic DNA. Translation: AED94650.1.
BT023465 mRNA. Translation: AAY56456.1.
RefSeqiNP_198933.1. NM_123482.3.
UniGeneiAt.49775.

3D structure databases

ProteinModelPortaliQ9FLL3.
SMRiQ9FLL3. Positions 48-527.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G41170.1.

Proteomic databases

PaxDbiQ9FLL3.
PRIDEiQ9FLL3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G41170.1; AT5G41170.1; AT5G41170.
GeneIDi834119.
GrameneiAT5G41170.1; AT5G41170.1; AT5G41170.
KEGGiath:AT5G41170.

Organism-specific databases

TAIRiAT5G41170.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9FLL3.
OMAiVPPNIRT.
OrthoDBiEOG093606HI.
PhylomeDBiQ9FLL3.

Miscellaneous databases

PROiQ9FLL3.

Gene expression databases

GenevisibleiQ9FLL3. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 12 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP412_ARATH
AccessioniPrimary (citable) accession number: Q9FLL3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.