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Protein

Probable WRKY transcription factor 16

Gene

WRKY16

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi170 – 1778ATPSequence analysis
DNA bindingi1174 – 124067WRKYPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Plant defense, Transcription, Transcription regulation

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 16
Alternative name(s):
WRKY DNA-binding protein 16
Gene namesi
Name:WRKY16
Ordered Locus Names:At5g45050
ORF Names:K21C13.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G45050.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: UniProtKB-SubCell
  • vacuolar membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13721372Probable WRKY transcription factor 16PRO_0000133658Add
BLAST

Proteomic databases

PaxDbiQ9FL92.
PRIDEiQ9FL92.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FL92. baseline and differential.
GenevisibleiQ9FL92. AT.

Interactioni

Protein-protein interaction databases

BioGridi19785. 1 interaction.
IntActiQ9FL92. 1 interaction.
STRINGi3702.AT5G45050.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FL92.
SMRiQ9FL92. Positions 5-140, 166-197, 569-806, 1181-1240.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 136132TIRAdd
BLAST
Domaini166 – 417252NB-ARCAdd
BLAST
Repeati570 – 59122LRR 1Add
BLAST
Repeati593 – 61523LRR 2Add
BLAST
Repeati616 – 63823LRR 3Add
BLAST
Repeati639 – 65921LRR 4Add
BLAST
Repeati660 – 68122LRR 5Add
BLAST
Repeati682 – 70019LRR 6Add
BLAST
Repeati725 – 74723LRR 7Add
BLAST
Repeati748 – 76821LRR 8Add
BLAST
Repeati769 – 79022LRR 9Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi950 – 96415Nuclear localization signalSequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi1252 – 12554Poly-Ser

Sequence similaritiesi

Contains 9 LRR (leucine-rich) repeats.Curated
Contains 1 NB-ARC domain.Curated
Contains 1 TIR domain.Curated
Contains 1 WRKY DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiENOG410JQXQ. Eukaryota.
ENOG410ZRAD. LUCA.
HOGENOMiHOG000115011.
InParanoidiQ9FL92.
OMAiGISCVCK.
PhylomeDBiQ9FL92.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
3.40.50.300. 2 hits.
3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
IPR011991. WHTH_DNA-bd_dom.
IPR003657. WRKY_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 1 hit.
PF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
SSF46785. SSF46785. 1 hit.
SSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q9FL92-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTESEQIVYI SCIEEVRYSF VSHLSKALQR KGVNDVFIDS DDSLSNESQS
60 70 80 90 100
MVERARVSVM ILPGNRTVSL DKLVKVLDCQ KNKDQVVVPV LYGVRSSETE
110 120 130 140 150
WLSALDSKGF SSVHHSRKEC SDSQLVKETV RDVYEKLFYM ERIGIYSKLL
160 170 180 190 200
EIEKMINKQP LDIRCVGIWG MPGIGKTTLA KAVFDQMSGE FDAHCFIEDY
210 220 230 240 250
TKAIQEKGVY CLLEEQFLKE NAGASGTVTK LSLLRDRLNN KRVLVVLDDV
260 270 280 290 300
RSPLVVESFL GGFDWFGPKS LIIITSKDKS VFRLCRVNQI YEVQGLNEKE
310 320 330 340 350
ALQLFSLCAS IDDMAEQNLH EVSMKVIKYA NGHPLALNLY GRELMGKKRP
360 370 380 390 400
PEMEIAFLKL KECPPAIFVD AIKSSYDTLN DREKNIFLDI ACFFQGENVD
410 420 430 440 450
YVMQLLEGCG FFPHVGIDVL VEKSLVTISE NRVRMHNLIQ DVGRQIINRE
460 470 480 490 500
TRQTKRRSRL WEPCSIKYLL EDKEQNENEE QKTTFERAQV PEEIEGMFLD
510 520 530 540 550
TSNLSFDIKH VAFDNMLNLR LFKIYSSNPE VHHVNNFLKG SLSSLPNVLR
560 570 580 590 600
LLHWENYPLQ FLPQNFDPIH LVEINMPYSQ LKKLWGGTKD LEMLKTIRLC
610 620 630 640 650
HSQQLVDIDD LLKAQNLEVV DLQGCTRLQS FPATGQLLHL RVVNLSGCTE
660 670 680 690 700
IKSFPEIPPN IETLNLQGTG IIELPLSIVK PNYRELLNLL AEIPGLSGVS
710 720 730 740 750
NLEQSDLKPL TSLMKISTSY QNPGKLSCLE LNDCSRLRSL PNMVNLELLK
760 770 780 790 800
ALDLSGCSEL ETIQGFPRNL KELYLVGTAV RQVPQLPQSL EFFNAHGCVS
810 820 830 840 850
LKSIRLDFKK LPVHYTFSNC FDLSPQVVND FLVQAMANVI AKHIPRERHV
860 870 880 890 900
TGFSQKTVQR SSRDSQQELN KTLAFSFCAP SHANQNSKLD LQPGSSSMTR
910 920 930 940 950
LDPSWRNTLV GFAMLVQVAF SEGYCDDTDF GISCVCKWKN KEGHSHRREI
960 970 980 990 1000
NLHCWALGKA VERDHTFVFF DVNMRPDTDE GNDPDIWADL VVFEFFPVNK
1010 1020 1030 1040 1050
QRKPLNDSCT VTRCGVRLIT AVNCNTSIEN ISPVLSLDPM EVSGNEDEEV
1060 1070 1080 1090 1100
LRVRYAGLQE IYKALFLYIA GLFNDEDVGL VAPLIANIID MDVSYGLKVL
1110 1120 1130 1140 1150
AYRSLIRVSS NGEIVMHYLL RQMGKEILHT ESKKTDKLVD NIQSSMIATK
1160 1170 1180 1190 1200
EIEITRSKSR RKNNKEKRVV CVVDRGSRSS DLWVWRKYGQ KPIKSSPYPR
1210 1220 1230 1240 1250
SYYRCASSKG CFARKQVERS RTDPNVSVIT YISEHNHPFP TLRNTLAGST
1260 1270 1280 1290 1300
RSSSSKCSDV TTSASSTVSQ DKEGPDKSHL PSSPASPPYA AMVVKEEDME
1310 1320 1330 1340 1350
QWDNMEFDVD VEEDTFIPEL FPEDTFADMD KLEENSQTMF LSRRSSGGNM
1360 1370
EAQGKNSSDD REVNLPSKIL NR
Length:1,372
Mass (Da):155,701
Last modified:March 1, 2001 - v1
Checksum:iE343FF0D880B9A70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010693, AB019224 Genomic DNA. Translation: BAB10888.1.
CP002688 Genomic DNA. Translation: AED95194.1.
RefSeqiNP_851133.1. NM_180802.1. [Q9FL92-1]
UniGeneiAt.21909.

Genome annotation databases

EnsemblPlantsiAT5G45050.1; AT5G45050.1; AT5G45050. [Q9FL92-1]
GeneIDi834536.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Web resourcesi

NIB-LRRS

Functional and comparative genomics of disease resistance gene homologs

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010693, AB019224 Genomic DNA. Translation: BAB10888.1.
CP002688 Genomic DNA. Translation: AED95194.1.
RefSeqiNP_851133.1. NM_180802.1. [Q9FL92-1]
UniGeneiAt.21909.

3D structure databases

ProteinModelPortaliQ9FL92.
SMRiQ9FL92. Positions 5-140, 166-197, 569-806, 1181-1240.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi19785. 1 interaction.
IntActiQ9FL92. 1 interaction.
STRINGi3702.AT5G45050.1.

Proteomic databases

PaxDbiQ9FL92.
PRIDEiQ9FL92.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G45050.1; AT5G45050.1; AT5G45050. [Q9FL92-1]
GeneIDi834536.

Organism-specific databases

TAIRiAT5G45050.

Phylogenomic databases

eggNOGiENOG410JQXQ. Eukaryota.
ENOG410ZRAD. LUCA.
HOGENOMiHOG000115011.
InParanoidiQ9FL92.
OMAiGISCVCK.
PhylomeDBiQ9FL92.

Miscellaneous databases

PROiQ9FL92.

Gene expression databases

ExpressionAtlasiQ9FL92. baseline and differential.
GenevisibleiQ9FL92. AT.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
3.40.50.300. 2 hits.
3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
IPR011991. WHTH_DNA-bd_dom.
IPR003657. WRKY_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 1 hit.
PF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
SSF46785. SSF46785. 1 hit.
SSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones."
    Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 5:131-145(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiWRK16_ARATH
AccessioniPrimary (citable) accession number: Q9FL92
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 11, 2003
Last sequence update: March 1, 2001
Last modified: May 11, 2016
This is version 127 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.