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Protein
Submitted name:

MADS-box protein AGL78

Gene

AGL78

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
MADS-box protein AGL78Imported
Submitted name:
Protein agamous-like 78Imported
Gene namesi
Name:AGL78Imported
Ordered Locus Names:At5g65330Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G65330.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G65330.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 5656MADS-boxInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 MADS-box domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000064579.
OMAiWPKERET.
OrthoDBiEOG09360KG5.
PhylomeDBiQ9FKQ5.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FKQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR
60 70 80 90 100
TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
110 120 130 140 150
PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS
160 170 180 190 200
YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
210 220 230 240 250
GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD
260 270 280 290 300
QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
310 320 330 340
ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
Length:341
Mass (Da):38,889
Last modified:March 1, 2001 - v1
Checksum:i1F66EFB4259D5F19
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY141224 mRNA. Translation: AAN52788.1.
CP002688 Genomic DNA. Translation: AED98040.1.
AB011479 Genomic DNA. Translation: BAB11555.1.
RefSeqiNP_201336.1. NM_125931.1.
UniGeneiAt.28914.

Genome annotation databases

EnsemblPlantsiAT5G65330.1; AT5G65330.1; AT5G65330.
GeneIDi836658.
GrameneiAT5G65330.1; AT5G65330.1; AT5G65330.
KEGGiath:AT5G65330.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY141224 mRNA. Translation: AAN52788.1.
CP002688 Genomic DNA. Translation: AED98040.1.
AB011479 Genomic DNA. Translation: BAB11555.1.
RefSeqiNP_201336.1. NM_125931.1.
UniGeneiAt.28914.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G65330.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G65330.1; AT5G65330.1; AT5G65330.
GeneIDi836658.
GrameneiAT5G65330.1; AT5G65330.1; AT5G65330.
KEGGiath:AT5G65330.

Organism-specific databases

TAIRiAT5G65330.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000064579.
OMAiWPKERET.
OrthoDBiEOG09360KG5.
PhylomeDBiQ9FKQ5.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9FKQ5_ARATH
AccessioniPrimary (citable) accession number: Q9FKQ5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.