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Protein

Ethylene-responsive transcription factor ERF104

Gene

ERF104

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi87 – 14559AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: TAIR

GO - Biological processi

  • cell division Source: TAIR
  • defense response to fungus Source: TAIR
  • ethylene-activated signaling pathway Source: UniProtKB-KW
  • positive regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
  • vasculature development Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF104
Gene namesi
Name:ERF104
Ordered Locus Names:At5g61600
ORF Names:K11J9.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G61600.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 241241Ethylene-responsive transcription factor ERF104PRO_0000290417Add
BLAST

Proteomic databases

PaxDbiQ9FKG1.

Expressioni

Gene expression databases

GenevisibleiQ9FKG1. AT.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
MPK6Q390263EBI-2360943,EBI-349548

Protein-protein interaction databases

BioGridi21525. 1 interaction.
DIPiDIP-48849N.
IntActiQ9FKG1. 1 interaction.
STRINGi3702.AT5G61600.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FKG1.
SMRiQ9FKG1. Positions 86-148.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JSEA. Eukaryota.
ENOG41108W0. LUCA.
HOGENOMiHOG000272710.
InParanoidiQ9FKG1.
KOiK09286.
OMAiFWDVGAG.
PhylomeDBiQ9FKG1.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FKG1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN
60 70 80 90 100
QSPKPNSTLN QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA
110 120 130 140 150
AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV
160 170 180 190 200
TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
210 220 230 240
PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
Length:241
Mass (Da):26,825
Last modified:March 1, 2001 - v1
Checksum:i086C0930A63339DC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti171 – 1711G → S in AAM67014 (Ref. 4) Curated
Sequence conflicti207 – 2071P → S in AAK25859 (PubMed:14593172).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012239 Genomic DNA. Translation: BAB09004.1.
CP002688 Genomic DNA. Translation: AED97495.1.
AF360149 mRNA. Translation: AAK25859.1.
AY054228 mRNA. Translation: AAL06888.1.
AY142636 mRNA. Translation: AAN13094.1.
AY088694 mRNA. Translation: AAM67014.1.
RefSeqiNP_200968.1. NM_125553.2.
UniGeneiAt.47568.

Genome annotation databases

EnsemblPlantsiAT5G61600.1; AT5G61600.1; AT5G61600.
GeneIDi836281.
GrameneiAT5G61600.1; AT5G61600.1; AT5G61600.
KEGGiath:AT5G61600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012239 Genomic DNA. Translation: BAB09004.1.
CP002688 Genomic DNA. Translation: AED97495.1.
AF360149 mRNA. Translation: AAK25859.1.
AY054228 mRNA. Translation: AAL06888.1.
AY142636 mRNA. Translation: AAN13094.1.
AY088694 mRNA. Translation: AAM67014.1.
RefSeqiNP_200968.1. NM_125553.2.
UniGeneiAt.47568.

3D structure databases

ProteinModelPortaliQ9FKG1.
SMRiQ9FKG1. Positions 86-148.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi21525. 1 interaction.
DIPiDIP-48849N.
IntActiQ9FKG1. 1 interaction.
STRINGi3702.AT5G61600.1.

Proteomic databases

PaxDbiQ9FKG1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G61600.1; AT5G61600.1; AT5G61600.
GeneIDi836281.
GrameneiAT5G61600.1; AT5G61600.1; AT5G61600.
KEGGiath:AT5G61600.

Organism-specific databases

TAIRiAT5G61600.

Phylogenomic databases

eggNOGiENOG410JSEA. Eukaryota.
ENOG41108W0. LUCA.
HOGENOMiHOG000272710.
InParanoidiQ9FKG1.
KOiK09286.
OMAiFWDVGAG.
PhylomeDBiQ9FKG1.

Miscellaneous databases

PROiQ9FKG1.

Gene expression databases

GenevisibleiQ9FKG1. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
    Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
    DNA Res. 5:203-216(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiEF104_ARATH
AccessioniPrimary (citable) accession number: Q9FKG1
Secondary accession number(s): Q8L909, Q9C5M2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: March 1, 2001
Last modified: February 17, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.