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Protein

Ras-related protein RABA1c

Gene

RABA1C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi20 – 27GTPBy similarity8
Nucleotide bindingi68 – 72GTPBy similarity5
Nucleotide bindingi126 – 129GTPBy similarity4
Nucleotide bindingi156 – 157GTPBy similarity2

GO - Molecular functioni

GO - Biological processi

  • cell wall biogenesis Source: TAIR
  • protein transport Source: UniProtKB-KW
  • small GTPase mediated signal transduction Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-5620916. VxPx cargo-targeting to cilium.

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABA1c
Short name:
AtRABA1c
Gene namesi
Name:RABA1C
Ordered Locus Names:At5g45750
ORF Names:MRA19.18
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G45750.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • nucleus Source: TAIR
  • plasma membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00003241252 – 216Ras-related protein RABA1cAdd BLAST215

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi213S-geranylgeranyl cysteineBy similarity1
Lipidationi214S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiQ9FK68.
PRIDEiQ9FK68.

PTM databases

iPTMnetiQ9FK68.

Expressioni

Gene expression databases

GenevisibleiQ9FK68. AT.

Interactioni

Protein-protein interaction databases

BioGridi19863. 18 interactors.
STRINGi3702.AT5G45750.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FK68.
SMRiQ9FK68.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi42 – 50Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0087. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiQ9FK68.
OMAiPANNQIA.
OrthoDBiEOG09360M9A.
PhylomeDBiQ9FK68.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FK68-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF
60 70 80 90 100
ATRSLNVDDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
110 120 130 140 150
FENVETWLKE LRNHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAEKESL
160 170 180 190 200
YFMETSALEA TNVENAFAEV LTQIHHIVSK KAMEAASESA NVPSKGDKID
210
IGKDVSAVKK GGCCSN
Length:216
Mass (Da):23,870
Last modified:March 1, 2001 - v1
Checksum:i6D8F0A3FF9765432
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti32R → L in AAM60865 (Ref. 4) Curated1
Sequence conflicti158L → F in AAM60865 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012245 Genomic DNA. Translation: BAB09217.1.
CP002688 Genomic DNA. Translation: AED95292.1.
AF370219 mRNA. Translation: AAK44034.1.
AY059111 mRNA. Translation: AAL15217.1.
AY084274 mRNA. Translation: AAM60865.1.
RefSeqiNP_199387.1. NM_123942.2.
UniGeneiAt.7538.

Genome annotation databases

EnsemblPlantsiAT5G45750.1; AT5G45750.1; AT5G45750.
GeneIDi834614.
GrameneiAT5G45750.1; AT5G45750.1; AT5G45750.
KEGGiath:AT5G45750.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB012245 Genomic DNA. Translation: BAB09217.1.
CP002688 Genomic DNA. Translation: AED95292.1.
AF370219 mRNA. Translation: AAK44034.1.
AY059111 mRNA. Translation: AAL15217.1.
AY084274 mRNA. Translation: AAM60865.1.
RefSeqiNP_199387.1. NM_123942.2.
UniGeneiAt.7538.

3D structure databases

ProteinModelPortaliQ9FK68.
SMRiQ9FK68.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi19863. 18 interactors.
STRINGi3702.AT5G45750.1.

PTM databases

iPTMnetiQ9FK68.

Proteomic databases

PaxDbiQ9FK68.
PRIDEiQ9FK68.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G45750.1; AT5G45750.1; AT5G45750.
GeneIDi834614.
GrameneiAT5G45750.1; AT5G45750.1; AT5G45750.
KEGGiath:AT5G45750.

Organism-specific databases

TAIRiAT5G45750.

Phylogenomic databases

eggNOGiKOG0087. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiQ9FK68.
OMAiPANNQIA.
OrthoDBiEOG09360M9A.
PhylomeDBiQ9FK68.

Enzyme and pathway databases

ReactomeiR-ATH-5620916. VxPx cargo-targeting to cilium.

Miscellaneous databases

PROiQ9FK68.

Gene expression databases

GenevisibleiQ9FK68. AT.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRAA1C_ARATH
AccessioniPrimary (citable) accession number: Q9FK68
Secondary accession number(s): Q8LGG9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.