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Q9FK28 (MEM12_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Membrin-12

Short name=AtMEMB12
Alternative name(s):
Golgi SNAP receptor complex member 2-2
Gene names
Name:MEMB12
Ordered Locus Names:At5g50440
ORF Names:MXI22.16
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length219 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network By similarity.

Subcellular location

Golgi apparatus membrane; Single-pass type IV membrane protein Potential.

Sequence similarities

Belongs to the GOSR2 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 219218Membrin-12
PRO_0000212555

Regions

Topological domain2 – 197196Cytoplasmic Potential
Transmembrane198 – 21518Helical; Anchor for type IV membrane protein; Potential
Topological domain216 – 2194Vesicular Potential

Amino acid modifications

Modified residue21N-acetylalanine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q9FK28 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: 9885F002AF89B4EC

FASTA21925,105
        10         20         30         40         50         60 
MASGTVGGLS EVYSSAKRIL LRARNGIEKL ERFDSDPTDL ASSVKRDITE VQSLCSNMDG 

        70         80         90        100        110        120 
LWRSIPVKSQ RDLWRRKSEQ VGEEAEYLNQ SLEKYMWRNQ RKMLEAKERA DLLGRGSGEG 

       130        140        150        160        170        180 
AHILQIFDEE AQGMNSVKNS KRMLEDSFQS GVAILSKYAE QRDRLKSAQR KALDVLNTVG 

       190        200        210 
LSNSVLRLIE RRNRVDTWIK YAGMIATLVI LYLFIRWTR 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
DNA Res. 5:203-216(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB012248 Genomic DNA. Translation: BAB09463.1.
CP002688 Genomic DNA. Translation: AED95946.1.
BT004999 mRNA. Translation: AAO50532.1.
RefSeqNP_199855.1. NM_124426.4.
UniGeneAt.29730.

3D structure databases

ProteinModelPortalQ9FK28.
SMRQ9FK28. Positions 131-187.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid20358. 1 interaction.

Proteomic databases

PaxDbQ9FK28.
PRIDEQ9FK28.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G50440.1; AT5G50440.1; AT5G50440.
GeneID835112.
KEGGath:AT5G50440.

Organism-specific databases

GeneFarm4298. 433.
TAIRAT5G50440.

Phylogenomic databases

eggNOGNOG148687.
HOGENOMHOG000264938.
InParanoidQ9FK28.
KOK08496.
OMAEVYSSAK.
PhylomeDBQ9FK28.

Gene expression databases

GenevestigatorQ9FK28.

Family and domain databases

InterProIPR027027. GOSR2/Membrin/Bos1.
[Graphical view]
PIRSFPIRSF028865. Membrin-2. 1 hit.
ProtoNetSearch...

Entry information

Entry nameMEM12_ARATH
AccessionPrimary (citable) accession number: Q9FK28
Entry history
Integrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: March 1, 2001
Last modified: May 14, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names