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Q9FK28

- MEM12_ARATH

UniProt

Q9FK28 - MEM12_ARATH

Protein

Membrin-12

Gene

MEMB12

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 81 (01 Oct 2014)
      Sequence version 1 (01 Mar 2001)
      Previous versions | rss
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    Functioni

    Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.By similarity

    GO - Biological processi

    1. protein transport Source: UniProtKB-KW
    2. regulation of innate immune response Source: TAIR
    3. regulation of protein secretion Source: TAIR

    Keywords - Biological processi

    Protein transport, Transport

    Enzyme and pathway databases

    ReactomeiREACT_187630. XBP1(S) activates chaperone genes.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Membrin-12
    Short name:
    AtMEMB12
    Alternative name(s):
    Golgi SNAP receptor complex member 2-2
    Gene namesi
    Name:MEMB12
    Ordered Locus Names:At5g50440
    ORF Names:MXI22.16
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G50440.

    Subcellular locationi

    GO - Cellular componenti

    1. cis-Golgi network Source: TAIR
    2. Golgi membrane Source: UniProtKB-SubCell
    3. Golgi stack Source: InterPro
    4. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Golgi apparatus, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 219218Membrin-12PRO_0000212555Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei2 – 21N-acetylalanineBy similarity

    Keywords - PTMi

    Acetylation

    Proteomic databases

    PaxDbiQ9FK28.
    PRIDEiQ9FK28.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9FK28.

    Interactioni

    Protein-protein interaction databases

    BioGridi20358. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9FK28.
    SMRiQ9FK28. Positions 131-187.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini2 – 197196CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini216 – 2194VesicularSequence Analysis

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei198 – 21518Helical; Anchor for type IV membrane proteinSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GOSR2 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG148687.
    HOGENOMiHOG000264938.
    InParanoidiQ9FK28.
    KOiK08496.
    OMAiEVYSSAK.
    PhylomeDBiQ9FK28.

    Family and domain databases

    InterProiIPR027027. GOSR2/Membrin/Bos1.
    [Graphical view]
    PIRSFiPIRSF028865. Membrin-2. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9FK28-1 [UniParc]FASTAAdd to Basket

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    MASGTVGGLS EVYSSAKRIL LRARNGIEKL ERFDSDPTDL ASSVKRDITE    50
    VQSLCSNMDG LWRSIPVKSQ RDLWRRKSEQ VGEEAEYLNQ SLEKYMWRNQ 100
    RKMLEAKERA DLLGRGSGEG AHILQIFDEE AQGMNSVKNS KRMLEDSFQS 150
    GVAILSKYAE QRDRLKSAQR KALDVLNTVG LSNSVLRLIE RRNRVDTWIK 200
    YAGMIATLVI LYLFIRWTR 219
    Length:219
    Mass (Da):25,105
    Last modified:March 1, 2001 - v1
    Checksum:i9885F002AF89B4EC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB012248 Genomic DNA. Translation: BAB09463.1.
    CP002688 Genomic DNA. Translation: AED95946.1.
    BT004999 mRNA. Translation: AAO50532.1.
    RefSeqiNP_199855.1. NM_124426.4.
    UniGeneiAt.29730.

    Genome annotation databases

    EnsemblPlantsiAT5G50440.1; AT5G50440.1; AT5G50440.
    GeneIDi835112.
    KEGGiath:AT5G50440.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB012248 Genomic DNA. Translation: BAB09463.1 .
    CP002688 Genomic DNA. Translation: AED95946.1 .
    BT004999 mRNA. Translation: AAO50532.1 .
    RefSeqi NP_199855.1. NM_124426.4.
    UniGenei At.29730.

    3D structure databases

    ProteinModelPortali Q9FK28.
    SMRi Q9FK28. Positions 131-187.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 20358. 1 interaction.

    Proteomic databases

    PaxDbi Q9FK28.
    PRIDEi Q9FK28.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G50440.1 ; AT5G50440.1 ; AT5G50440 .
    GeneIDi 835112.
    KEGGi ath:AT5G50440.

    Organism-specific databases

    GeneFarmi 4298. 433.
    TAIRi AT5G50440.

    Phylogenomic databases

    eggNOGi NOG148687.
    HOGENOMi HOG000264938.
    InParanoidi Q9FK28.
    KOi K08496.
    OMAi EVYSSAK.
    PhylomeDBi Q9FK28.

    Enzyme and pathway databases

    Reactomei REACT_187630. XBP1(S) activates chaperone genes.

    Gene expression databases

    Genevestigatori Q9FK28.

    Family and domain databases

    InterProi IPR027027. GOSR2/Membrin/Bos1.
    [Graphical view ]
    PIRSFi PIRSF028865. Membrin-2. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
      Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
      DNA Res. 5:203-216(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiMEM12_ARATH
    AccessioniPrimary (citable) accession number: Q9FK28
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 17, 2003
    Last sequence update: March 1, 2001
    Last modified: October 1, 2014
    This is version 81 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3