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Protein

Protein DA1-related 7

Gene

DAR7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Ubiquitin receptor that probably regulates developmental process.By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein DA1-related 7
Gene namesi
Name:DAR7
Ordered Locus Names:At5g66610
ORF Names:K1F13.29
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G66610.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 560560Protein DA1-related 7PRO_0000396942Add
BLAST

Proteomic databases

PaxDbiQ9FJX9.
PRIDEiQ9FJX9.

PTM databases

iPTMnetiQ9FJX9.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FJX9. baseline and differential.
GenevisibleiQ9FJX9. AT.

Interactioni

Subunit structurei

Interacts with ubiquitin.By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT5G66610.2.

Structurei

3D structure databases

ProteinModelPortaliQ9FJX9.
SMRiQ9FJX9. Positions 199-325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini43 – 6220UIM 1CuratedAdd
BLAST
Domaini92 – 11120UIM 2CuratedAdd
BLAST
Domaini155 – 17420UIM 3CuratedAdd
BLAST
Domaini199 – 26971LIM zinc-bindingPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi485 – 4917Poly-Ser

Domaini

The UIM domains bind molecules modified by monoubiquitin or ubiquitin chains and promote coupled monoubiquitination.By similarity

Sequence similaritiesi

Contains 1 LIM zinc-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

LIM domain, Repeat

Phylogenomic databases

eggNOGiKOG1703. Eukaryota.
ENOG410XRD4. LUCA.
HOGENOMiHOG000239946.
InParanoidiQ9FJX9.
PhylomeDBiQ9FJX9.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR022087. DA1-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF12315. DUF3633. 1 hit.
PF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS00142. ZINC_PROTEASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9FJX9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MWCLSCFKPS TKHDPSEDRF EEETNIVTGI SLYEDVILRQ RRSEADQIEW
60 70 80 90 100
AIQDSFNPQE TSRCRQREED DQIARGLQYV EETELDKSVV DEEDQQLSKI
110 120 130 140 150
VEESLKEKGK SKQFEDDQVE NDEQQALMVQ ESLYMVELSA QLEEDKNIST
160 170 180 190 200
IPPLNEDAQL QKVIWESAKG KGQIEHFKDP VEEDGNLPRV DLNVNHPHSI
210 220 230 240 250
CDGCKSAIEY GRSVHALGVN WHPECFCCRY CDKPIAMHEF SNTKGRCHIT
260 270 280 290 300
CYERSHPNCH VCKKKFPGRK YKEHPFWKEK YCPFHEVDGT PKCCSCERLE
310 320 330 340 350
PWGTKYVMLA DNRWLCVKCM ECAVMDTYEC QPLHFEIREF FGSLNMKVEK
360 370 380 390 400
EFPLLLVEKE ALKKAEAQEK IDNQHGVVTR GICLSEGQIV NSVFKKPTMG
410 420 430 440 450
PNGELVSLGT EPQKVVGGCE VTAILILYGL PRLLTGYILA HEMMHAWLRL
460 470 480 490 500
NGYRNLKLEL EEGICQVLGH MWLESQTYSS SAAASSASSS SRTPAANASK
510 520 530 540 550
KGAQSDYEKK LVEFCKDQIE TDDSPVYGVG FRKVNQMVSD SSLHKILKSI
560
QHWTKPDSNL
Length:560
Mass (Da):64,041
Last modified:August 10, 2010 - v2
Checksum:iD87EE4D3F796987B
GO

Sequence cautioni

The sequence BAB10937 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti33 – 331Y → D in BAF01047 (Ref. 3) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB013389 Genomic DNA. Translation: BAB10937.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED98238.1.
AK229177 mRNA. Translation: BAF01047.1.
RefSeqiNP_201462.2. NM_126059.4. [Q9FJX9-1]
UniGeneiAt.28860.

Genome annotation databases

EnsemblPlantsiAT5G66610.1; AT5G66610.1; AT5G66610. [Q9FJX9-1]
GeneIDi836793.
KEGGiath:AT5G66610.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB013389 Genomic DNA. Translation: BAB10937.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED98238.1.
AK229177 mRNA. Translation: BAF01047.1.
RefSeqiNP_201462.2. NM_126059.4. [Q9FJX9-1]
UniGeneiAt.28860.

3D structure databases

ProteinModelPortaliQ9FJX9.
SMRiQ9FJX9. Positions 199-325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G66610.2.

PTM databases

iPTMnetiQ9FJX9.

Proteomic databases

PaxDbiQ9FJX9.
PRIDEiQ9FJX9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G66610.1; AT5G66610.1; AT5G66610. [Q9FJX9-1]
GeneIDi836793.
KEGGiath:AT5G66610.

Organism-specific databases

TAIRiAT5G66610.

Phylogenomic databases

eggNOGiKOG1703. Eukaryota.
ENOG410XRD4. LUCA.
HOGENOMiHOG000239946.
InParanoidiQ9FJX9.
PhylomeDBiQ9FJX9.

Miscellaneous databases

PROiQ9FJX9.

Gene expression databases

ExpressionAtlasiQ9FJX9. baseline and differential.
GenevisibleiQ9FJX9. AT.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR022087. DA1-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF12315. DUF3633. 1 hit.
PF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS00142. ZINC_PROTEASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDAR7_ARATH
AccessioniPrimary (citable) accession number: Q9FJX9
Secondary accession number(s): Q0WPA2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: August 10, 2010
Last modified: June 8, 2016
This is version 95 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.