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Protein

60S ribosomal protein L26-2

Gene

RPL26B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L26-2
Gene namesi
Name:RPL26B
Ordered Locus Names:At5g67510
ORF Names:K9I9.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G67510.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14614660S ribosomal protein L26-2PRO_0000130798Add
BLAST

Proteomic databases

PaxDbiQ9FJX2.
PRIDEiQ9FJX2.

Expressioni

Gene expression databases

GenevisibleiQ9FJX2. AT.

Interactioni

Protein-protein interaction databases

BioGridi22129. 1 interaction.
IntActiQ9FJX2. 1 interaction.
STRINGi3702.AT5G67510.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FJX2.
SMRiQ9FJX2. Positions 7-122.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24P family.Curated

Phylogenomic databases

eggNOGiKOG3401. Eukaryota.
COG0198. LUCA.
HOGENOMiHOG000216571.
InParanoidiQ9FJX2.
KOiK02898.
OMAiVMQVYRR.
OrthoDBiEOG09360SM0.
PhylomeDBiQ9FJX2.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FJX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFNPRVSSS RRKNRKAHFT APSSVRRVLM SSPLSKDLRN KHNVRSMPIR
60 70 80 90 100
KDDEVQVVRG TFKGREGKVM QVYRRKWVIH IERITREKVN GSTVNVGVNA
110 120 130 140
SNVMITKLRL DKDRKSLLER KANGRAAADK EKGTKFSAED VMENVD
Length:146
Mass (Da):16,790
Last modified:March 1, 2001 - v1
Checksum:i15D6F29EC60876B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB013390 Genomic DNA. Translation: BAB08459.1.
CP002688 Genomic DNA. Translation: AED98354.1.
AY065109 mRNA. Translation: AAL38285.1.
AY081628 mRNA. Translation: AAM10190.1.
AY086530 mRNA. Translation: AAM63595.1.
RefSeqiNP_201552.1. NM_126151.1.
UniGeneiAt.28589.

Genome annotation databases

EnsemblPlantsiAT5G67510.1; AT5G67510.1; AT5G67510.
GeneIDi836887.
GrameneiAT5G67510.1; AT5G67510.1; AT5G67510.
KEGGiath:AT5G67510.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB013390 Genomic DNA. Translation: BAB08459.1.
CP002688 Genomic DNA. Translation: AED98354.1.
AY065109 mRNA. Translation: AAL38285.1.
AY081628 mRNA. Translation: AAM10190.1.
AY086530 mRNA. Translation: AAM63595.1.
RefSeqiNP_201552.1. NM_126151.1.
UniGeneiAt.28589.

3D structure databases

ProteinModelPortaliQ9FJX2.
SMRiQ9FJX2. Positions 7-122.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22129. 1 interaction.
IntActiQ9FJX2. 1 interaction.
STRINGi3702.AT5G67510.1.

Proteomic databases

PaxDbiQ9FJX2.
PRIDEiQ9FJX2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G67510.1; AT5G67510.1; AT5G67510.
GeneIDi836887.
GrameneiAT5G67510.1; AT5G67510.1; AT5G67510.
KEGGiath:AT5G67510.

Organism-specific databases

TAIRiAT5G67510.

Phylogenomic databases

eggNOGiKOG3401. Eukaryota.
COG0198. LUCA.
HOGENOMiHOG000216571.
InParanoidiQ9FJX2.
KOiK02898.
OMAiVMQVYRR.
OrthoDBiEOG09360SM0.
PhylomeDBiQ9FJX2.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ9FJX2.

Gene expression databases

GenevisibleiQ9FJX2. AT.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL262_ARATH
AccessioniPrimary (citable) accession number: Q9FJX2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2003
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.