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Reviewed, UniProtKB/Swiss-Prot Q9FJU9 (E1313_ARATH)

Last modified February 9, 2010. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Glucan endo-1,3-beta-glucosidase 13
    EC=3.2.1.39
Alternative name(s):
    (1->3)-beta-glucan endohydrolase 13
      Short name=(1->3)-beta-glucanase 13
    Beta-1,3-endoglucanase 13
      Short name=Beta-1,3-glucanase 13
Gene names
Ordered Locus Names: At5g56590
ORF Names: MIK19.3
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length506 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Catalytic activity

Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

Subcellular location

Secreted › cell wall Potential. Cell membrane; Lipid-anchor › GPI-anchor; Extracellular side Ref.3.

Sequence similarities

Belongs to the glycosyl hydrolase 17 family.

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential
Chain23 – 471449Glucan endo-1,3-beta-glucosidase 13
PRO_0000251273
Propeptide472 – 50635Removed in mature form Potential
PRO_0000251274

Sites

Active site2641Nucleophile By similarity
Active site3281Nucleophile By similarity

Amino acid modifications

Lipidation4711GPI-anchor amidated serine Potential
Glycosylation701N-linked (GlcNAc...) Potential
Glycosylation1271N-linked (GlcNAc...) Potential
Glycosylation1751N-linked (GlcNAc...) Potential
Glycosylation2121N-linked (GlcNAc...) Potential
Glycosylation3561N-linked (GlcNAc...) Potential
Glycosylation3611N-linked (GlcNAc...) Potential
Glycosylation4591N-linked (GlcNAc...) Potential
Glycosylation4651N-linked (GlcNAc...) Potential

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Sequences

Sequence LengthMass (Da)Tools
Q9FJU9-1 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: DC314FEF619BE810

FASTA50655,604
        10         20         30         40         50         60 
MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY 

        70         80         90        100        110        120 
NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN SVLPYYPTTK ITYITVGAES 

       130        140        150        160        170        180 
TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY 

       190        200        210        220        230        240 
FLRPMLEFLA ENKSPFMIDL YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD 

       250        260        270        280        290        300 
AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG 

       310        320        330        340        350        360 
TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT 

       370        380        390        400        410        420 
NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ PSQPCFQPDT LVSHASFVFN 

       430        440        450        460        470        480 
SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE 

       490        500 
LLQWILKLCL MISLFFSLQT MNSQAL

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References

[1]"Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones."
Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.
DNA Res. 5:203-216(1998) [PubMed: 9734815] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[3]"Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed: 14517339] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
+Additional computationally mapped references.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AB013392 Genomic DNA. Translation: BAB09876.1.
AY133637 mRNA. Translation: AAM91467.1.
AY075591 mRNA. Translation: AAL91612.1.
IPIIPI00517863.
RefSeqNP_200470.1.
UniGeneAt.43021

3D structure databases

HSSPHSSP built from PDB template 2CYG based on UniProtKB O22317.
SMRQ9FJU9. Positions 26-346.
ModBaseSearch...

Protein family/group databases

CAZyCBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Proteomic databases

PRIDEQ9FJU9.

Genome annotation databases

GeneID835760.
GenomeReviewsGene locus AT5G56590 in contig BA000015_GR.
KEGGath:AT5G56590.
NMPDRfig|3702.1.peg.27599.

Organism-specific databases

TAIRAt5g56590.

Phylogenomic databases

HOGENOMHBG605194.
InParanoidQ9FJU9.
OMASERNWGL.

Enzyme and pathway databases

BRENDA3.2.1.39. 302.

Gene expression databases

GenevestigatorQ9FJU9.
GermOnlineAT5G56590. Arabidopsis thaliana.

Family and domain databases

InterProIPR000490. Glyco_hydro_17.
IPR017853. Glyco_hydro_catalytic_core.
IPR013781. Glyco_hydro_sg_catalytic.
IPR012946. X8.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PfamPF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view]
SMARTSM00768. X8. 1 hit.
[Graphical view]
PROSITEPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameE1313_ARATH
AccessionPrimary (citable) accession number: Q9FJU9
Entry history
Integrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: March 1, 2001
Last modified: February 9, 2010
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents