Reviewed,
UniProtKB/Swiss-Prot Q9FJU9 (E1313_ARATH)
Last modified
June 16, 2009.
Version 46.
History...
Clusters with 100%,
90%,
50% identity |
Documents (3) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Putative glucan endo-1,3-beta-glucosidase 13 EC=3.2.1.39 Alternative name(s): (1->3)-beta-glucan endohydrolase 13 Short name=(1->3)-beta-glucanase 13 Beta-1,3-endoglucanase 13 Short name=Beta-1,3-glucanase 13 | ||||
| Gene names |
| ||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) [Complete proteome] | ||||
| Taxonomic identifier | 3702 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis |
Protein attributes
| Sequence length | 506 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Catalytic activity | Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans. |
| Subcellular location | Secreted › cell wall Potential. Cell membrane; Lipid-anchor › GPI-anchor; Extracellular side. |
| Sequence similarities | Belongs to the glycosyl hydrolase 17 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell wall biogenesis/degradation Plant defense |
| Cellular component | Cell membrane Cell wall Membrane Secreted |
| Domain | Signal |
| Molecular function | Glycosidase Hydrolase |
| PTM | GPI-anchor Glycoprotein Lipoprotein |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cell wall organizationInferred from electronic annotation. Source: UniProtKB-KW defense responseInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | anchored to plasma membrane Ref.3 Inferred from direct assay. Source: TAIR extracellular regionInferred from electronic annotation. Source: UniProtKB-SubCell plant-type cell wallInferred from direct assay. Source: TAIR |
| Molecular function | cation binding Inferred from electronic annotation. Source: InterPro glucan endo-1,3-beta-D-glucosidase activityInferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 22 | 22 | Potential | ||||||
| Chain | 23 – 471 | 449 | Putative glucan endo-1,3-beta-glucosidase 13 | PRO_0000251273 | |||||
| Propeptide | 472 – 506 | 35 | Removed in mature form Potential | PRO_0000251274 | |||||
Amino acid modifications | |||||||||
| Lipidation | 471 | 1 | GPI-anchor amidated serine Potential | ||||||
| Glycosylation | 70 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 127 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 175 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 212 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 356 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 361 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 459 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 465 | 1 | N-linked (GlcNAc...) Potential | ||||||
Sequences
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References
| [1] | "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones." Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S. DNA Res. 5:203-216(1998) [PubMed: 9734815] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [2] | "Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. Ecker J.R.Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia. |
| [3] | "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins." Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N. Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed: 14517339] [Abstract] Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| AB013392 Genomic DNA. Translation: BAB09876.1. AY133637 mRNA. Translation: AAM91467.1. AY075591 mRNA. Translation: AAL91612.1. | |
| IPI | IPI00517863. |
| RefSeq | NP_200470.1. |
| UniGene | At.43021 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1GHS based on UniProtKB P15737. |
| ModBase | Search... |
Protein family/group databases | |
| CAZy | CBM43. Carbohydrate-Binding Module Family 43. GH17. Glycoside Hydrolase Family 17. |
Proteomic databases | |
| PRIDE | Q9FJU9. |
Genome annotation databases | |
| GeneID | 835760. |
| GenomeReviews | Gene locus AT5G56590 in contig BA000015_GR. |
| KEGG | ath:AT5G56590. |
| NMPDR | fig|3702.1.peg.27599. |
Organism-specific databases | |
| TAIR | At5g56590. |
Phylogenomic databases | |
| OMA | Q9FJU9. SERNWGL. |
Enzyme and pathway databases | |
| BRENDA | 3.2.1.39. 302. |
Gene expression databases | |
| GermOnline | AT5G56590. Arabidopsis thaliana. |
Family and domain databases | |
| InterPro | IPR000490. Glyco_hydro_17. IPR013781. Glyco_hydro_sg_catalytic. IPR012946. X8. [Graphical view] |
| Gene3D | G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. |
| Pfam | PF00332. Glyco_hydro_17. 1 hit. PF07983. X8. 1 hit. [Graphical view] |
| SMART | SM00768. X8. 1 hit. [Graphical view] |
| PROSITE | PS00587. GLYCOSYL_HYDROL_F17. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | E1313_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q9FJU9 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | PPAP (Plant Proteome Annotation Project) | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| Glycosyl hydrolases Classification of glycosyl hydrolase families and list of entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with


