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Q9FJC3 (Q9FJC3_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:At5g53610 TAIR At5g53610
ORF Names:AT5G53610 EMBL AED96385.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL BAB09737.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonscore eudicotyledonsrosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length110 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
Q9FJC3 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: D151290F548BBEB8

FASTA11012,130
        10         20         30         40         50         60 
MSLQFLTLIF LLSAAVIYHI PVVTCEPWCS AMPSSTPEQL QANIQLACSR VDCTPIQPGG 

        70         80         90        100        110 
FCYYPNTLLD HASFVMNSYY KSQGRTYAAC SFGNTGYLIY SDPSTGTCEF 

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References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones."
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S.
DNA Res. 5:297-308(1998) [PubMed: 9872454] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed: 11130714] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002688 Genomic DNA. Translation: AED96385.1.
AB015476 Genomic DNA. Translation: BAB09737.1.
IPIIPI00519464.
RefSeqNP_200173.1. NM_124741.1.
UniGeneAt.55527.

3D structure databases

ProteinModelPortalQ9FJC3.
SMRQ9FJC3. Positions 23-110.
ModBaseSearch...

Protein family/group databases

CAZyCBM43. Carbohydrate-Binding Module Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G53610.1; AT5G53610.1; AT5G53610.
GeneID835443.
GenomeReviewsGene locus AT5G53610 in contig BA000015_GR.
KEGGath:AT5G53610.
NMPDRfig|3702.1.peg.27257.

Organism-specific databases

TAIRAt5g53610.

Phylogenomic databases

GeneTreeEPGT00050000009358.
HOGENOMHBG603981.
InParanoidQ9FJC3.
OMACEPWCSA.
PhylomeDBQ9FJC3.
ProtClustDBCLSN2686548.

Gene expression databases

GenevestigatorQ9FJC3.

Family and domain databases

InterProIPR012946. X8.
[Graphical view]
PfamPF07983. X8. 1 hit.
[Graphical view]
SMARTSM00768. X8. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9FJC3_ARATH
AccessionPrimary (citable) accession number: Q9FJC3
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)