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Protein

40S ribosomal protein S3-3

Gene

RPS3C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • DNA repair Source: GO_Central
  • response to salt stress Source: TAIR

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S3-3
Gene namesi
Name:RPS3C
Ordered Locus Names:At5g35530
ORF Names:MOK9.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G35530
TAIRilocus:2169518 AT5G35530

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002501791 – 24840S ribosomal protein S3-3Add BLAST248

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei212PhosphothreonineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9FJA6
PRIDEiQ9FJA6

PTM databases

iPTMnetiQ9FJA6

Expressioni

Gene expression databases

ExpressionAtlasiQ9FJA6 baseline and differential
GenevisibleiQ9FJA6 AT

Interactioni

Protein-protein interaction databases

BioGridi18771, 3 interactors
STRINGi3702.AT5G35530.1

Structurei

3D structure databases

ProteinModelPortaliQ9FJA6
SMRiQ9FJA6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 92KH type-2PROSITE-ProRule annotationAdd BLAST72

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3181 Eukaryota
COG0092 LUCA
HOGENOMiHOG000210611
InParanoidiQ9FJA6
KOiK02985
OMAiPKEDDVY
OrthoDBiEOG09360K1B
PhylomeDBiQ9FJA6

Family and domain databases

Gene3Di3.30.1140.32, 1 hit
3.30.300.20, 1 hit
InterProiView protein in InterPro
IPR015946 KH_dom-like_a/b
IPR004044 KH_dom_type_2
IPR009019 KH_sf_prok-type
IPR001351 Ribosomal_S3_C
IPR036419 Ribosomal_S3_C_sf
IPR005703 Ribosomal_S3_euk/arc
PfamiView protein in Pfam
PF07650 KH_2, 1 hit
PF00189 Ribosomal_S3_C, 1 hit
SUPFAMiSSF54814 SSF54814, 1 hit
SSF54821 SSF54821, 1 hit
TIGRFAMsiTIGR01008 uS3_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS50823 KH_TYPE_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FJA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATQISKKRK FVADGVFYAE LNEVLTRELA EDGYSGVEVR VTPMRTEIII
60 70 80 90 100
RATRTQNVLG EKGRRIRELT SLVQKRFKFP QDSVELYAEK VANRGLCAIA
110 120 130 140 150
QAESLRYKLL GGLAVRRACY GVLRFVMESG AKGCEVIVSG KLRAARAKSM
160 170 180 190 200
KFKDGYMVSS GQPTKEYIDA AVRHVLLRQG VLGLKVKIML DWDPKGKQGP
210 220 230 240
MTPLPDVVII HTPKEDDVYI APAQVVTQAA FVPEAPLTTT DYPAMPVA
Length:248
Mass (Da):27,458
Last modified:March 1, 2001 - v1
Checksum:i1E3B7DD65D163898
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015477 Genomic DNA Translation: BAB08712.1
CP002688 Genomic DNA Translation: AED93978.1
AY058057 mRNA Translation: AAL24165.1
AY098949 mRNA Translation: AAM19959.1
RefSeqiNP_198403.1, NM_122944.5
UniGeneiAt.23305

Genome annotation databases

EnsemblPlantsiAT5G35530.1; AT5G35530.1; AT5G35530
GeneIDi833518
GrameneiAT5G35530.1; AT5G35530.1; AT5G35530
KEGGiath:AT5G35530

Similar proteinsi

Entry informationi

Entry nameiRS33_ARATH
AccessioniPrimary (citable) accession number: Q9FJA6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health