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Protein

Pentatricopeptide repeat-containing protein At5g39710

Gene

EMB2745

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g39710
Alternative name(s):
Protein EMBRYO DEFECTIVE 2745
Gene namesi
Name:EMB2745
Ordered Locus Names:At5g39710
ORF Names:MIJ24.190
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G39710.
TAIRilocus:2164910. AT5G39710.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635441 – 747Pentatricopeptide repeat-containing protein At5g39710Add BLAST747

Proteomic databases

PaxDbiQ9FIX3.

Expressioni

Gene expression databases

GenevisibleiQ9FIX3. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G39710.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FIX3.
SMRiQ9FIX3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati133 – 167PPR 1Add BLAST35
Repeati168 – 203PPR 2Add BLAST36
Repeati204 – 238PPR 3Add BLAST35
Repeati239 – 273PPR 4Add BLAST35
Repeati274 – 308PPR 5Add BLAST35
Repeati309 – 343PPR 6Add BLAST35
Repeati344 – 378PPR 7Add BLAST35
Repeati379 – 413PPR 8Add BLAST35
Repeati414 – 448PPR 9Add BLAST35
Repeati449 – 483PPR 10Add BLAST35
Repeati484 – 518PPR 11Add BLAST35
Repeati519 – 553PPR 12Add BLAST35
Repeati554 – 588PPR 13Add BLAST35
Repeati604 – 638PPR 14Add BLAST35
Repeati639 – 673PPR 15Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000084219.
InParanoidiQ9FIX3.
OMAiAKFNGFM.
OrthoDBiEOG093602ND.
PhylomeDBiQ9FIX3.

Family and domain databases

InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
PfamiView protein in Pfam
PF12854. PPR_1. 3 hits.
PF13041. PPR_2. 5 hits.
TIGRFAMsiTIGR00756. PPR. 12 hits.
PROSITEiView protein in PROSITE
PS51375. PPR. 16 hits.

Sequencei

Sequence statusi: Complete.

Q9FIX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA
60 70 80 90 100
ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
110 120 130 140 150
ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI
160 170 180 190 200
DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
210 220 230 240 250
VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY
260 270 280 290 300
CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
310 320 330 340 350
MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS
360 370 380 390 400
LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
410 420 430 440 450
RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV
460 470 480 490 500
VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
510 520 530 540 550
TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG
560 570 580 590 600
VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
610 620 630 640 650
SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH
660 670 680 690 700
CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
710 720 730 740
VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS
Length:747
Mass (Da):84,274
Last modified:March 1, 2001 - v1
Checksum:i1DAC020F52DD1E90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016876, AB012243 Genomic DNA. Translation: BAB11377.1.
CP002688 Genomic DNA. Translation: AED94466.1.
RefSeqiNP_198787.1. NM_123333.2.
UniGeneiAt.55259.

Genome annotation databases

EnsemblPlantsiAT5G39710.1; AT5G39710.1; AT5G39710.
GeneIDi833967.
GrameneiAT5G39710.1; AT5G39710.1; AT5G39710.
KEGGiath:AT5G39710.

Similar proteinsi

Entry informationi

Entry nameiPP407_ARATH
AccessioniPrimary (citable) accession number: Q9FIX3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: June 7, 2017
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families