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Unreviewed, UniProtKB/TrEMBL Q9FIW6 (Q9FIW6_ARATH)

Last modified April 14, 2009. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21 EMBL BAB11385.1
Gene names
Ordered Locus Names: At5g39810 TAIR At5g39810
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length329 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Subcellular location

Nucleus By similarity. RuleBase RU000476V3

Sequence similarities

Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002100

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Sequences

Sequence LengthMass (Da)Tools
Q9FIW6-1 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: A33B8636C04897C8

FASTA32937,289
        10         20         30         40         50         60 
MAIRSLPSSS GCSNSSSSSS YSLASTSLSN RLETIFRKAS ELCTLCDIEA CVIYYGPDGE 

        70         80         90        100        110        120 
LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK KNKTNLEKKA KIKDNDLKRL 

       130        140        150        160        170        180 
SLEPHVSKVR ERIRFVESQK HKETKPDHQS LASSSLNNQT QSLNPSQFSL FMYNHGDNIL 

       190        200        210        220        230        240 
SQIPVSASNF NQDYFSALLE QSELKSQIMK QEVCGYEQNM CMSNNGDATL SQIPLSASNF 

       250        260        270        280        290        300 
NQEFSALLQE ESGLMQQELC NYDQNMFMNN NNFQHSFVSN TQDHSAPAVQ ESVNNNYGLM 

       310        320 
PHVPCGYDQN LFTSDITNNN LLIDNSMFL

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References

[1]"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones."
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S.
DNA Res. 5:297-308(1998) [PubMed: 9872454] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

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Cross-references

Sequence databases

AB016876 Genomic DNA. Translation: BAB11385.1.
IPIIPI00526667.
RefSeqNP_198797.1.
UniGeneAt.55261

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActQ9FIW6. 8 interactions.

Genome annotation databases

GeneID833977.
GenomeReviewsGene locus AT5G39810 in contig BA000015_GR.
KEGGath:AT5G39810.
NMPDRfig|3702.1.peg.25679.

Organism-specific databases

TAIRAt5g39810.

Family and domain databases

InterProIPR002100. TF_MADSbox.
[Graphical view]
PfamPF00319. SRF-TF. 1 hit.
[Graphical view]
SMARTSM00432. MADS. 1 hit.
[Graphical view]
PROSITEPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameQ9FIW6_ARATH
AccessionPrimary (citable) accession number: Q9FIW6
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: April 14, 2009
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information