Q9FIW6 (Q9FIW6_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein agamous-like 98 EMBL AED94478.1

Gene names

Name:	AGL98 EMBL AED94478.1
Ordered Locus Names:	At5g39810 TAIR At5g39810
ORF Names:	AT5G39810 EMBL AED94478.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL BAB11385.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	329 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Nucleus By similarity RuleBase RU000476.
Sequence similarities	Contains 1 MADS-box domain. SAAS SAAS002100 RuleBase RU000476

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS002100 RuleBase RU000476
Cellular component	Nucleus SAAS SAAS002100 RuleBase RU000476
Ligand	DNA-binding SAAS SAAS002100 RuleBase RU000476
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW protein dimerization activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9FIW6 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: A33B8636C04897C8	FASTA	329	37,289
	10 20 30 40 50 60 MAIRSLPSSS GCSNSSSSSS YSLASTSLSN RLETIFRKAS ELCTLCDIEA CVIYYGPDGE 70 80 90 100 110 120 LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK KNKTNLEKKA KIKDNDLKRL 130 140 150 160 170 180 SLEPHVSKVR ERIRFVESQK HKETKPDHQS LASSSLNNQT QSLNPSQFSL FMYNHGDNIL 190 200 210 220 230 240 SQIPVSASNF NQDYFSALLE QSELKSQIMK QEVCGYEQNM CMSNNGDATL SQIPLSASNF 250 260 270 280 290 300 NQEFSALLQE ESGLMQQELC NYDQNMFMNN NNFQHSFVSN TQDHSAPAVQ ESVNNNYGLM 310 320 PHVPCGYDQN LFTSDITNNN LLIDNSMFL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones." Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S. DNA Res. 5:297-308(1998) [PubMed: 9872454] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F. Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002688 Genomic DNA. Translation: AED94478.1. AB016876 Genomic DNA. Translation: BAB11385.1.
IPI	IPI00526667.
RefSeq	NP_198797.1. NM_123344.1.
UniGene	At.55261.
3D structure databases
ProteinModelPortal	Q9FIW6.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9FIW6. 8 interactions.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G39810.1; AT5G39810.1; AT5G39810.
GeneID	833977.
GenomeReviews	Gene locus AT5G39810 in contig BA000015_GR.
KEGG	ath:AT5G39810.
NMPDR	fig|3702.1.peg.25679.
Organism-specific databases
TAIR	At5g39810.
Phylogenomic databases
eggNOG	KOG0014.
GeneTree	EPGT00050000009835.
HOGENOM	HBG316768.
InParanoid	Q9FIW6.
PhylomeDB	Q9FIW6.
ProtClustDB	CLSN2686226.
Gene expression databases
Genevestigator	Q9FIW6.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
SMART	SM00432. MADS. 1 hit. [Graphical view]
SUPFAM	SSF55455. TF_MADSbox. 1 hit.
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9FIW6_ARATH

Accession

Primary (citable) accession number: Q9FIW6

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2001
Last modified:	January 25, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)