ID BGL42_ARATH Reviewed; 490 AA. AC Q9FIW4; Q2V330; DT 15-DEC-2009, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2001, sequence version 1. DT 27-MAR-2024, entry version 133. DE RecName: Full=Beta-glucosidase 42 {ECO:0000303|PubMed:15604686}; DE Short=AtBGLU42 {ECO:0000303|PubMed:15604686}; DE EC=3.2.1.21 {ECO:0000269|PubMed:34965581}; DE Flags: Precursor; GN Name=BGLU42 {ECO:0000303|PubMed:15604686}; GN OrderedLocusNames=At5g36890 {ECO:0000312|Araport:AT5G36890}; GN ORFNames=MLF18.1 {ECO:0000312|EMBL:BAB11630.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10048488; DOI=10.1093/dnares/5.6.379; RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence RT features of the regions of 1,081,958 bp covered by seventeen physically RT assigned P1 and TAC clones."; RL DNA Res. 5:379-391(1998). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RX PubMed=27862469; DOI=10.1111/tpj.13415; RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., RA Town C.D.; RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference RT genome."; RL Plant J. 89:789-804(2017). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y., RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M., RA Shinozaki K., Ecker J.R.; RT "Arabidopsis ORF clones."; RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=cv. Columbia; RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., RA Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP GENE FAMILY, AND NOMENCLATURE. RX PubMed=15604686; DOI=10.1007/s11103-004-0790-1; RA Xu Z., Escamilla-Trevino L.L., Zeng L., Lalgondar M., Bevan D.R., RA Winkel B.S.J., Mohamed A., Cheng C.-L., Shih M.-C., Poulton J.E., Esen A.; RT "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase RT family 1."; RL Plant Mol. Biol. 55:343-367(2004). RN [6] RP FUNCTION, DISRUPTION PHENOTYPE, INDUCTION BY PSEUDOMONAS FLUORESCENS, AND RP TISSUE SPECIFICITY. RC STRAIN=cv. Columbia; RX PubMed=25138267; DOI=10.1111/nph.12980; RA Zamioudis C., Hanson J., Pieterse C.M.J.; RT "beta-Glucosidase BGLU42 is a MYB72-dependent key regulator of RT rhizobacteria-induced systemic resistance and modulates iron deficiency RT responses in Arabidopsis roots."; RL New Phytol. 204:368-379(2014). RN [7] RP X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS), FUNCTION, MUTAGENESIS OF ARG-342, RP CATALYTIC ACTIVITY, AND BIOPHYSICOCHEMICAL PROPERTIES. RC STRAIN=cv. Columbia; RX PubMed=34965581; DOI=10.1093/bbb/zbab200; RA Horikoshi S., Saburi W., Yu J., Matsuura H., Cairns J.R.K., Yao M., RA Mori H.; RT "Substrate specificity of glycoside hydrolase family 1 beta-glucosidase RT AtBGlu42 from Arabidopsis thaliana and its molecular mechanism."; RL Biosci. Biotechnol. Biochem. 86:231-245(2022). CC -!- FUNCTION: Glucosidase that hydrolyzes scopolin and various beta- CC glucosides, cellooligosaccharides (mainly cellotriose) and CC laminarioligosaccharides (PubMed:34965581). Can use p-nitrophenyl-beta- CC glucosides (pNP beta-Glc) and p-nitrophenyl-beta-D-fucosides (pNP beta- CC D-Fuc) as substrates, and, to a lower extent, beta-galactosides, beta- CC mannosides and beta-xylosides (PubMed:34965581). Involved in the CC secretion of root-derived phenolics upon iron ions (Fe) depletion CC (PubMed:25138267). Promotes disease resistance toward B.cinerea, CC H.arabidopsidis and P.syringae pv. tomato DC3000 (PubMed:25138267). CC Required during rhizobacteria-mediated (e.g. P.fluorescens WCS417r) CC broad-spectrum induced systemic resistance (ISR) against several CC pathogens (PubMed:25138267). {ECO:0000269|PubMed:25138267, CC ECO:0000269|PubMed:34965581}. CC -!- CATALYTIC ACTIVITY: CC Reaction=Hydrolysis of terminal, non-reducing beta-D-glucosyl residues CC with release of beta-D-glucose.; EC=3.2.1.21; CC Evidence={ECO:0000269|PubMed:34965581}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=0.142 mM for pNP beta-D-glucopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=0.158 mM for pNP beta-D-fucopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=9.93 mM for pNP beta-D-galactopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=0.29 mM for pNP beta-D-mannopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=1.62 mM for pNP beta-D-xylopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=0.0978 mM for pNP beta-D-cellobioside CC {ECO:0000269|PubMed:34965581}; CC KM=0.0827 mM for 4-methylumbelliferyl beta-D-glucopyranoside CC {ECO:0000269|PubMed:34965581}; CC KM=0.0981 mM for scopolin {ECO:0000269|PubMed:34965581}; CC KM=0.0657 mM for helicin {ECO:0000269|PubMed:34965581}; CC KM=4.07 mM for cellobiose {ECO:0000269|PubMed:34965581}; CC KM=0.126 mM for cellotriose {ECO:0000269|PubMed:34965581}; CC KM=0.231 mM for cellotetraose {ECO:0000269|PubMed:34965581}; CC KM=0.283 mM for cellopentaose {ECO:0000269|PubMed:34965581}; CC KM=0.314 mM for cellohexaose {ECO:0000269|PubMed:34965581}; CC KM=0.117 mM for laminaribiose {ECO:0000269|PubMed:34965581}; CC KM=0.636 mM for laminaritriose {ECO:0000269|PubMed:34965581}; CC KM=0.864 mM for sophorose {ECO:0000269|PubMed:34965581}; CC KM=16.9 mM for gentiobiose {ECO:0000269|PubMed:34965581}; CC Note=kcat is 10.2 sec(-1) with pNP beta-D-glucopyranoside as CC substrate (PubMed:34965581). kcat is 12.9 sec(-1) with pNP CC beta-D-fucopyranoside as substrate (PubMed:34965581). kcat is 13.6 CC sec(-1) with pNP beta-D-galactopyranoside as substrate CC (PubMed:34965581). kcat is 0.233 sec(-1) with pNP CC beta-D-mannopyranoside as substrate (PubMed:34965581). kcat is 0.464 CC sec(-1) with pNP beta-D-xylopyranoside as substrate CC (PubMed:34965581). kcat is 9.4 sec(-1) with pNP beta-D-cellobioside CC as substrate (PubMed:34965581). kcat is 8.03 sec(-1) with CC 4-methylumbelliferyl beta-D-glucopyranoside as substrate CC (PubMed:34965581). kcat is 10.2 sec(-1) with scopolin as substrate CC (PubMed:34965581). kcat is 10.5 sec(-1) with helicin as substrate CC (PubMed:34965581). kcat is 6.42 sec(-1) with cellobiose as substrate CC (PubMed:34965581). kcat is 10.8 sec(-1) with cellotriose as substrate CC (PubMed:34965581). kcat is 10.3 sec(-1) with cellotetraose as CC substrate (PubMed:34965581). kcat is 10.2 sec(-1) with cellopentaose CC as substrate (PubMed:34965581). kcat is 9.67 sec(-1) with CC cellohexaose as substrate (PubMed:34965581). kcat is 11.1 sec(-1) CC with laminaribiose as substrate (PubMed:34965581). kcat is 10.7 CC sec(-1) with laminaritriose as substrate (PubMed:34965581). kcat is CC 11.9 sec(-1) with sophorose as substrate (PubMed:34965581). kcat is CC 0.543 sec(-1) with gentiobiose as substrate (PubMed:34965581). CC {ECO:0000269|PubMed:34965581}; CC pH dependence: CC Optimum pH is 6.8. {ECO:0000269|PubMed:34965581}; CC Temperature dependence: CC Optimum temperature is 40 degrees Celsius. CC {ECO:0000269|PubMed:34965581}; CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9FIW4-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9FIW4-2; Sequence=VSP_038498, VSP_038499; CC -!- TISSUE SPECIFICITY: Expressed at low levels predominantly in root CC epidermal cells. {ECO:0000269|PubMed:25138267}. CC -!- INDUCTION: Accumulates upon rhizobacteria-mediated (e.g. P.fluorescens CC WCS417r) induced systemic resistance (ISR) in root trichoblasts and, to CC a lesser extent, in cortical cells. {ECO:0000269|PubMed:25138267}. CC -!- DISRUPTION PHENOTYPE: Reduced secretion of root-derived phenolics upon CC iron ions (Fe) depletion, thus leading to their accumulation in the CC root interior. Impaired P.fluorescens WCS417r-mediated broad-spectrum CC induced systemic resistance (ISR) against several pathogens. CC {ECO:0000269|PubMed:25138267}. CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 1 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB016877; BAB11630.1; -; Genomic_DNA. DR EMBL; CP002688; AED94122.1; -; Genomic_DNA. DR EMBL; CP002688; AED94123.1; -; Genomic_DNA. DR EMBL; BT010611; AAQ89633.1; -; mRNA. DR EMBL; AK175760; BAD43523.1; -; mRNA. DR RefSeq; NP_001031975.1; NM_001036898.2. [Q9FIW4-2] DR RefSeq; NP_198505.2; NM_123047.4. [Q9FIW4-1] DR PDB; 7F3A; X-ray; 1.70 A; A=1-490. DR PDBsum; 7F3A; -. DR AlphaFoldDB; Q9FIW4; -. DR SMR; Q9FIW4; -. DR BioGRID; 18907; 1. DR STRING; 3702.Q9FIW4; -. DR CAZy; GH1; Glycoside Hydrolase Family 1. DR GlyCosmos; Q9FIW4; 1 site, No reported glycans. DR PaxDb; 3702-AT5G36890-1; -. DR ProteomicsDB; 240623; -. [Q9FIW4-1] DR EnsemblPlants; AT5G36890.1; AT5G36890.1; AT5G36890. [Q9FIW4-1] DR EnsemblPlants; AT5G36890.2; AT5G36890.2; AT5G36890. [Q9FIW4-2] DR GeneID; 833656; -. DR Gramene; AT5G36890.1; AT5G36890.1; AT5G36890. [Q9FIW4-1] DR Gramene; AT5G36890.2; AT5G36890.2; AT5G36890. [Q9FIW4-2] DR KEGG; ath:AT5G36890; -. DR Araport; AT5G36890; -. DR TAIR; AT5G36890; BGLU42. DR eggNOG; KOG0626; Eukaryota. DR InParanoid; Q9FIW4; -. DR OMA; HGSNDFY; -. DR OrthoDB; 3373839at2759; -. DR PhylomeDB; Q9FIW4; -. DR BioCyc; ARA:AT5G36890-MONOMER; -. DR PRO; PR:Q9FIW4; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q9FIW4; baseline and differential. DR GO; GO:0005829; C:cytosol; HDA:TAIR. DR GO; GO:0008422; F:beta-glucosidase activity; IEA:UniProtKB-EC. DR GO; GO:0102483; F:scopolin beta-glucosidase activity; IEA:UniProtKB-EC. DR GO; GO:0030245; P:cellulose catabolic process; IEA:InterPro. DR GO; GO:0009866; P:induced systemic resistance, ethylene mediated signaling pathway; IMP:UniProtKB. DR GO; GO:0031349; P:positive regulation of defense response; IMP:UniProtKB. DR GO; GO:0009617; P:response to bacterium; IEP:UniProtKB. DR GO; GO:1990641; P:response to iron ion starvation; IMP:UniProtKB. DR GO; GO:0019748; P:secondary metabolic process; IMP:UniProtKB. DR Gene3D; 3.20.20.80; Glycosidases; 1. DR InterPro; IPR001360; Glyco_hydro_1. DR InterPro; IPR017736; Glyco_hydro_1_beta-glucosidase. DR InterPro; IPR033132; Glyco_hydro_1_N_CS. DR InterPro; IPR017853; Glycoside_hydrolase_SF. DR NCBIfam; TIGR03356; BGL; 1. DR PANTHER; PTHR10353; GLYCOSYL HYDROLASE; 1. DR PANTHER; PTHR10353:SF36; KLOTHO (MAMMALIAN AGING-ASSOCIATED PROTEIN) HOMOLOG; 1. DR Pfam; PF00232; Glyco_hydro_1; 1. DR PRINTS; PR00131; GLHYDRLASE1. DR SUPFAM; SSF51445; (Trans)glycosidases; 1. DR PROSITE; PS00653; GLYCOSYL_HYDROL_F1_2; 1. DR Genevisible; Q9FIW4; AT. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; Glycoprotein; Glycosidase; Hydrolase; KW Plant defense; Reference proteome; Signal. FT SIGNAL 1..? FT /evidence="ECO:0000255" FT CHAIN ?..490 FT /note="Beta-glucosidase 42" FT /id="PRO_0000390315" FT ACT_SITE 183 FT /note="Proton donor" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT ACT_SITE 388 FT /note="Nucleophile" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 35 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 137 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 182..183 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8GU20" FT BINDING 317 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 388 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q9SPP9" FT BINDING 437 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 444..445 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q8L7J2" FT BINDING 453 FT /ligand="a beta-D-glucoside" FT /ligand_id="ChEBI:CHEBI:22798" FT /evidence="ECO:0000250|UniProtKB:Q1XH05" FT SITE 342 FT /note="Important for substrate chain length specificity" FT /evidence="ECO:0000269|PubMed:34965581" FT CARBOHYD 420 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498" FT VAR_SEQ 487 FT /note="G -> E (in isoform 2)" FT /evidence="ECO:0000305" FT /id="VSP_038498" FT VAR_SEQ 488..490 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000305" FT /id="VSP_038499" FT MUTAGEN 342 FT /note="R->A,Y: Highest preference on cellotetraose and FT cellopentaose with increased affinities at subsite (+)3." FT /evidence="ECO:0000269|PubMed:34965581" FT HELIX 1..11 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 18..20 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 26..30 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 33..36 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 49..54 FT /evidence="ECO:0007829|PDB:7F3A" FT TURN 66..70 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 72..86 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 89..94 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 97..100 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 106..108 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 111..126 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 130..138 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 142..148 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 150..152 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 156..171 FT /evidence="ECO:0007829|PDB:7F3A" FT TURN 172..174 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 177..182 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 184..192 FT /evidence="ECO:0007829|PDB:7F3A" FT TURN 205..207 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 208..230 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 232..235 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 238..244 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 247..253 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 255..268 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 270..278 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 283..289 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 290..292 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 298..306 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 310..315 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 319..324 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 333..336 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 340..343 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 351..355 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 366..378 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 384..388 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 401..405 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 408..427 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 431..437 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 445..450 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 455..459 FT /evidence="ECO:0007829|PDB:7F3A" FT TURN 460..464 FT /evidence="ECO:0007829|PDB:7F3A" FT STRAND 465..468 FT /evidence="ECO:0007829|PDB:7F3A" FT HELIX 470..480 FT /evidence="ECO:0007829|PDB:7F3A" SQ SEQUENCE 490 AA; 56077 MW; 50DED68FBF06D538 CRC64; MAQKLNLLNL AVPPVTHRSN FPSTFTFGVA TSAYQIEGGW NEGKKGPSIW DKFTHIEGKI LDGSNGDVAV DHYHRYKEDV DLIGQLGFGA YRFSISWSRI FPDGLGTEVN EEGIAFYNDL INTLLEKGIQ PYVTLYHWDL PSHLQEAIGG WTNRKIVDYF GLYADACFAN FGDRVKHWIT LNEPLQTSVN GHCIGIFAPG RNEKPLIEPY LVSHHQVLAH ATAVSIYRSK YKESQGGQIG LSVDCEWAEP NSEKPEDKVA ADRRIDFQLG WFLDPLFFGD YPASMRQKLG DNLPRFTPEE KEFMLQNSWD FLGLNHYTSR LISHVSNKEA ESNFYQAQEL ERIVELENGD LIGERAASDW LYAVPWGIRK TLNYMSKKYN HPPIFITENG MDDEDDGSAS IHDMLDDKRR VDYFKSYLAN VSQAIEDGVD IKGYFAWSLL DNFEWAQGYT KRFGLVYVDY KNGLTRHPKS SAYWFMKFLK GDEENKGKKE //