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Protein

Pentatricopeptide repeat-containing protein At5g48910

Gene

PCMP-H38

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • RNA modification Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g48910
Gene namesi
Name:PCMP-H38
Ordered Locus Names:At5g48910
ORF Names:K19E20.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G48910.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635621 – 646Pentatricopeptide repeat-containing protein At5g48910Add BLAST646

Proteomic databases

PaxDbiQ9FI80.

Expressioni

Gene expression databases

GenevisibleiQ9FI80. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G48910.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FI80.
SMRiQ9FI80.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati54 – 88PPR 1Add BLAST35
Repeati89 – 126PPR 2Add BLAST38
Repeati127 – 161PPR 3Add BLAST35
Repeati162 – 197PPR 4Add BLAST36
Repeati207 – 237PPR 5Add BLAST31
Repeati238 – 272PPR 6Add BLAST35
Repeati273 – 307PPR 7Add BLAST35
Repeati308 – 338PPR 8Add BLAST31
Repeati339 – 373PPR 9Add BLAST35
Repeati374 – 409PPR 10Add BLAST36
Repeati410 – 440PPR 11Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni445 – 520Type E motifAdd BLAST76
Regioni521 – 551Type E(+) motifAdd BLAST31
Regioni552 – 646Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 11 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FI80.
OMAiEDCHSSI.
OrthoDBiEOG093608UJ.
PhylomeDBiQ9FI80.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FI80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPTQTLFSP GGNSPASSPA SHPSSLFPQI NNCRTIRDLS QIHAVFIKSG
60 70 80 90 100
QMRDTLAAAE ILRFCATSDL HHRDLDYAHK IFNQMPQRNC FSWNTIIRGF
110 120 130 140 150
SESDEDKALI AITLFYEMMS DEFVEPNRFT FPSVLKACAK TGKIQEGKQI
160 170 180 190 200
HGLALKYGFG GDEFVMSNLV RMYVMCGFMK DARVLFYKNI IEKDMVVMTD
210 220 230 240 250
RRKRDGEIVL WNVMIDGYMR LGDCKAARML FDKMRQRSVV SWNTMISGYS
260 270 280 290 300
LNGFFKDAVE VFREMKKGDI RPNYVTLVSV LPAISRLGSL ELGEWLHLYA
310 320 330 340 350
EDSGIRIDDV LGSALIDMYS KCGIIEKAIH VFERLPRENV ITWSAMINGF
360 370 380 390 400
AIHGQAGDAI DCFCKMRQAG VRPSDVAYIN LLTACSHGGL VEEGRRYFSQ
410 420 430 440 450
MVSVDGLEPR IEHYGCMVDL LGRSGLLDEA EEFILNMPIK PDDVIWKALL
460 470 480 490 500
GACRMQGNVE MGKRVANILM DMVPHDSGAY VALSNMYASQ GNWSEVSEMR
510 520 530 540 550
LRMKEKDIRK DPGCSLIDID GVLHEFVVED DSHPKAKEIN SMLVEISDKL
560 570 580 590 600
RLAGYRPITT QVLLNLEEED KENVLHYHSE KIATAFGLIS TSPGKPIRIV
610 620 630 640
KNLRICEDCH SSIKLISKVY KRKITVRDRK RFHHFQDGSC SCMDYW
Length:646
Mass (Da):73,259
Last modified:March 1, 2001 - v1
Checksum:iB99DFA39E6B8A304
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017061 Genomic DNA. Translation: BAB10314.1.
CP002688 Genomic DNA. Translation: AED95742.1.
AY056318 mRNA. Translation: AAL07167.1.
RefSeqiNP_199702.1. NM_124268.2.
UniGeneiAt.26336.

Genome annotation databases

EnsemblPlantsiAT5G48910.1; AT5G48910.1; AT5G48910.
GeneIDi834949.
GrameneiAT5G48910.1; AT5G48910.1; AT5G48910.
KEGGiath:AT5G48910.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017061 Genomic DNA. Translation: BAB10314.1.
CP002688 Genomic DNA. Translation: AED95742.1.
AY056318 mRNA. Translation: AAL07167.1.
RefSeqiNP_199702.1. NM_124268.2.
UniGeneiAt.26336.

3D structure databases

ProteinModelPortaliQ9FI80.
SMRiQ9FI80.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G48910.1.

Proteomic databases

PaxDbiQ9FI80.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G48910.1; AT5G48910.1; AT5G48910.
GeneIDi834949.
GrameneiAT5G48910.1; AT5G48910.1; AT5G48910.
KEGGiath:AT5G48910.

Organism-specific databases

TAIRiAT5G48910.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FI80.
OMAiEDCHSSI.
OrthoDBiEOG093608UJ.
PhylomeDBiQ9FI80.

Miscellaneous databases

PROiQ9FI80.

Gene expression databases

GenevisibleiQ9FI80. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP425_ARATH
AccessioniPrimary (citable) accession number: Q9FI80
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: November 30, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.