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Protein

Pentatricopeptide repeat-containing protein At5g48910

Gene

PCMP-H38

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • RNA modification Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g48910
Gene namesi
Name:PCMP-H38
Ordered Locus Names:At5g48910
ORF Names:K19E20.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G48910.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 646646Pentatricopeptide repeat-containing protein At5g48910PRO_0000363562Add
BLAST

Proteomic databases

PaxDbiQ9FI80.
PRIDEiQ9FI80.

Expressioni

Gene expression databases

GenevisibleiQ9FI80. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G48910.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FI80.
SMRiQ9FI80. Positions 50-509.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati54 – 8835PPR 1Add
BLAST
Repeati89 – 12638PPR 2Add
BLAST
Repeati127 – 16135PPR 3Add
BLAST
Repeati162 – 19736PPR 4Add
BLAST
Repeati207 – 23731PPR 5Add
BLAST
Repeati238 – 27235PPR 6Add
BLAST
Repeati273 – 30735PPR 7Add
BLAST
Repeati308 – 33831PPR 8Add
BLAST
Repeati339 – 37335PPR 9Add
BLAST
Repeati374 – 40936PPR 10Add
BLAST
Repeati410 – 44031PPR 11Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni445 – 52076Type E motifAdd
BLAST
Regioni521 – 55131Type E(+) motifAdd
BLAST
Regioni552 – 64695Type DYW motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 11 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FI80.
OMAiEDCHSSI.
OrthoDBiEOG093608UJ.
PhylomeDBiQ9FI80.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FI80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPTQTLFSP GGNSPASSPA SHPSSLFPQI NNCRTIRDLS QIHAVFIKSG
60 70 80 90 100
QMRDTLAAAE ILRFCATSDL HHRDLDYAHK IFNQMPQRNC FSWNTIIRGF
110 120 130 140 150
SESDEDKALI AITLFYEMMS DEFVEPNRFT FPSVLKACAK TGKIQEGKQI
160 170 180 190 200
HGLALKYGFG GDEFVMSNLV RMYVMCGFMK DARVLFYKNI IEKDMVVMTD
210 220 230 240 250
RRKRDGEIVL WNVMIDGYMR LGDCKAARML FDKMRQRSVV SWNTMISGYS
260 270 280 290 300
LNGFFKDAVE VFREMKKGDI RPNYVTLVSV LPAISRLGSL ELGEWLHLYA
310 320 330 340 350
EDSGIRIDDV LGSALIDMYS KCGIIEKAIH VFERLPRENV ITWSAMINGF
360 370 380 390 400
AIHGQAGDAI DCFCKMRQAG VRPSDVAYIN LLTACSHGGL VEEGRRYFSQ
410 420 430 440 450
MVSVDGLEPR IEHYGCMVDL LGRSGLLDEA EEFILNMPIK PDDVIWKALL
460 470 480 490 500
GACRMQGNVE MGKRVANILM DMVPHDSGAY VALSNMYASQ GNWSEVSEMR
510 520 530 540 550
LRMKEKDIRK DPGCSLIDID GVLHEFVVED DSHPKAKEIN SMLVEISDKL
560 570 580 590 600
RLAGYRPITT QVLLNLEEED KENVLHYHSE KIATAFGLIS TSPGKPIRIV
610 620 630 640
KNLRICEDCH SSIKLISKVY KRKITVRDRK RFHHFQDGSC SCMDYW
Length:646
Mass (Da):73,259
Last modified:March 1, 2001 - v1
Checksum:iB99DFA39E6B8A304
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017061 Genomic DNA. Translation: BAB10314.1.
CP002688 Genomic DNA. Translation: AED95742.1.
AY056318 mRNA. Translation: AAL07167.1.
RefSeqiNP_199702.1. NM_124268.1.
UniGeneiAt.26336.

Genome annotation databases

EnsemblPlantsiAT5G48910.1; AT5G48910.1; AT5G48910.
GeneIDi834949.
GrameneiAT5G48910.1; AT5G48910.1; AT5G48910.
KEGGiath:AT5G48910.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017061 Genomic DNA. Translation: BAB10314.1.
CP002688 Genomic DNA. Translation: AED95742.1.
AY056318 mRNA. Translation: AAL07167.1.
RefSeqiNP_199702.1. NM_124268.1.
UniGeneiAt.26336.

3D structure databases

ProteinModelPortaliQ9FI80.
SMRiQ9FI80. Positions 50-509.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G48910.1.

Proteomic databases

PaxDbiQ9FI80.
PRIDEiQ9FI80.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G48910.1; AT5G48910.1; AT5G48910.
GeneIDi834949.
GrameneiAT5G48910.1; AT5G48910.1; AT5G48910.
KEGGiath:AT5G48910.

Organism-specific databases

TAIRiAT5G48910.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FI80.
OMAiEDCHSSI.
OrthoDBiEOG093608UJ.
PhylomeDBiQ9FI80.

Miscellaneous databases

PROiQ9FI80.

Gene expression databases

GenevisibleiQ9FI80. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP425_ARATH
AccessioniPrimary (citable) accession number: Q9FI80
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: September 7, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.