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Protein

GATA transcription factor 5

Gene

GATA5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri245 – 299GATA-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
GATA transcription factor 5
Gene namesi
Name:GATA5
Ordered Locus Names:At5g66320
ORF Names:K1L20.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G66320
TAIRilocus:2155056 AT5G66320

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000834431 – 339GATA transcription factor 5Add BLAST339

Proteomic databases

PaxDbiQ9FH57

Expressioni

Gene expression databases

ExpressionAtlasiQ9FH57 baseline and differential
GenevisibleiQ9FH57 AT

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT5G66320.1

Structurei

3D structure databases

ProteinModelPortaliQ9FH57
SMRiQ9FH57
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi167 – 174Nuclear localization signalSequence analysis8

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi181 – 209Ser-richAdd BLAST29

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri245 – 299GATA-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
HOGENOMiHOG000238267
InParanoidiQ9FH57
OMAiTEYSGPN
OrthoDBiEOG09360R7K
PhylomeDBiQ9FH57

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR016679 TF_GATA_pln
IPR000679 Znf_GATA
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00320 GATA, 1 hit
PIRSFiPIRSF016992 TF_GATA_plant, 1 hit
SMARTiView protein in SMART
SM00401 ZnF_GATA, 1 hit
PROSITEiView protein in PROSITE
PS00344 GATA_ZN_FINGER_1, 1 hit
PS50114 GATA_ZN_FINGER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FH57-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQAALKSSV RKEMALKTTS PVYEEFLAVT TAQNGFSVDD FSVDDLLDLS
60 70 80 90 100
NDDVFADEET DLKAQHEMVR VSSEEPNDDG DALRRSSDFS GCDDFGSLPT
110 120 130 140 150
SELSLPADDL ANLEWLSHFV EDSFTEYSGP NLTGTPTEKP AWLTGDRKHP
160 170 180 190 200
VTAVTEETCF KSPVPAKARS KRNRNGLKVW SLGSSSSSGP SSSGSTSSSS
210 220 230 240 250
SGPSSPWFSG AELLEPVVTS ERPPFPKKHK KRSAESVFSG ELQQLQPQRK
260 270 280 290 300
CSHCGVQKTP QWRAGPMGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE
310 320 330
LHSNHHRKVI EMRRKKEPTS DNETGLNQLV QSPQAVPSF
Length:339
Mass (Da):37,091
Last modified:March 1, 2001 - v1
Checksum:i2FFB0ABB541D3523
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022211 Genomic DNA Translation: BAB10711.1
CP002688 Genomic DNA Translation: AED98198.1
CP002688 Genomic DNA Translation: AED98199.1
AY136450 mRNA Translation: AAM97115.1
BT010367 mRNA Translation: AAQ56810.1
RefSeqiNP_201433.1, NM_126030.6
NP_975002.1, NM_203273.2
UniGeneiAt.28170

Genome annotation databases

EnsemblPlantsiAT5G66320.1; AT5G66320.1; AT5G66320
AT5G66320.2; AT5G66320.2; AT5G66320
GeneIDi836764
GrameneiAT5G66320.1; AT5G66320.1; AT5G66320
AT5G66320.2; AT5G66320.2; AT5G66320
KEGGiath:AT5G66320

Similar proteinsi

Entry informationi

Entry nameiGATA5_ARATH
AccessioniPrimary (citable) accession number: Q9FH57
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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