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Q9FGH4

- E139_ARATH

UniProt

Q9FGH4 - E139_ARATH

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Protein

Glucan endo-1,3-beta-glucosidase 9

Gene

At5g58480

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei327 – 3271NucleophileBy similarity

GO - Molecular functioni

  1. glucan endo-1,3-beta-D-glucosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. cell wall organization Source: UniProtKB-KW
  3. defense response Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Cell wall biogenesis/degradation, Plant defense

Enzyme and pathway databases

BioCyciARA:AT5G58480-MONOMER.

Protein family/group databases

CAZyiCBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucan endo-1,3-beta-glucosidase 9 (EC:3.2.1.39)
Alternative name(s):
(1->3)-beta-glucan endohydrolase 9
Short name:
(1->3)-beta-glucanase 9
Beta-1,3-endoglucanase 9
Short name:
Beta-1,3-glucanase 9
Gene namesi
Ordered Locus Names:At5g58480
ORF Names:MQJ2.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G58480.

Subcellular locationi

GO - Cellular componenti

  1. anchored component of membrane Source: TAIR
  2. anchored component of plasma membrane Source: TAIR
  3. cell wall Source: UniProtKB-KW
  4. extracellular region Source: UniProtKB-KW
  5. plasma membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cell wall, Membrane, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence AnalysisAdd
BLAST
Chaini26 – 453428Glucan endo-1,3-beta-glucosidase 9PRO_0000251265Add
BLAST
Propeptidei454 – 47623Removed in mature formSequence AnalysisPRO_0000251266Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi88 – 881N-linked (GlcNAc...)Sequence Analysis
Glycosylationi101 – 1011N-linked (GlcNAc...)Sequence Analysis
Glycosylationi184 – 1841N-linked (GlcNAc...)Sequence Analysis
Glycosylationi216 – 2161N-linked (GlcNAc...)Sequence Analysis
Glycosylationi277 – 2771N-linked (GlcNAc...)Sequence Analysis
Glycosylationi320 – 3201N-linked (GlcNAc...)Sequence Analysis
Glycosylationi342 – 3421N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi364 ↔ 424By similarity
Glycosylationi374 – 3741N-linked (GlcNAc...)Sequence Analysis
Glycosylationi405 – 4051N-linked (GlcNAc...)Sequence Analysis
Lipidationi453 – 4531GPI-anchor amidated serineSequence Analysis

Post-translational modificationi

Contains two additional disulfide bonds.By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

PaxDbiQ9FGH4.
PRIDEiQ9FGH4.

Expressioni

Gene expression databases

GenevestigatoriQ9FGH4.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G58480.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9FGH4.
SMRiQ9FGH4. Positions 26-345.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 17 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG266375.
HOGENOMiHOG000238221.
InParanoidiQ9FGH4.
OMAiLPNSVPR.
PhylomeDBiQ9FGH4.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view]
PfamiPF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view]
SMARTiSM00768. X8. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FGH4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARRLFLLLL AVTAGLSLTG TTVRAVGINW GTEASHPLPP SKVVELLKSN
60 70 80 90 100
GIVKVKLFDA DPKVLRALSG SNIGVTIGIQ NSMLKSLNAS VKVAESWVHD
110 120 130 140 150
NVTRYFNGGN RVRIEYVAVG EEPFLQSYGN QYKPFVIGAA MNIQNALVKA
160 170 180 190 200
NLANEVKVVV PSSFDSFLSE SGRPSSGHFR ADLNKTMIEL LSFLTKHHSP
210 220 230 240 250
FFVTISPFLS FHQNKNISLD FSLFKETAKA HKDGRKTYRN SFDLSYDTLV
260 270 280 290 300
SALFTIGFSE VDIVVSKIGW PTDGAENATS LTAEAFFKGL IVHLEKKTAS
310 320 330 340 350
LPRPPVETYI ESLLDEDQRN LSAGNFERHW GVFTFDGQAK YNFSFNHKNQ
360 370 380 390 400
VNAQNVQYLP PKWCVVNNNK DLSNASARAL EACAVADCTS ILPGGSCSGI
410 420 430 440 450
RWPGNVSYAF NSLYQQNDHS AESCNFGGLG LITTVDPSED NCRFSIQLDT
460 470
SHSSSQTPNF FQSWPLLLLF LLSGLF
Length:476
Mass (Da):52,370
Last modified:March 1, 2001 - v1
Checksum:i00CC6739B10CBB20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB025632 Genomic DNA. Translation: BAB10263.1.
CP002688 Genomic DNA. Translation: AED97058.1.
BT005117 mRNA. Translation: AAO50650.1.
BT003904 mRNA. Translation: AAO41952.1.
RefSeqiNP_200656.2. NM_125234.3.
UniGeneiAt.29278.

Genome annotation databases

EnsemblPlantsiAT5G58480.1; AT5G58480.1; AT5G58480.
GeneIDi835961.
KEGGiath:AT5G58480.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB025632 Genomic DNA. Translation: BAB10263.1 .
CP002688 Genomic DNA. Translation: AED97058.1 .
BT005117 mRNA. Translation: AAO50650.1 .
BT003904 mRNA. Translation: AAO41952.1 .
RefSeqi NP_200656.2. NM_125234.3.
UniGenei At.29278.

3D structure databases

ProteinModelPortali Q9FGH4.
SMRi Q9FGH4. Positions 26-345.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT5G58480.1-P.

Protein family/group databases

CAZyi CBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Proteomic databases

PaxDbi Q9FGH4.
PRIDEi Q9FGH4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G58480.1 ; AT5G58480.1 ; AT5G58480 .
GeneIDi 835961.
KEGGi ath:AT5G58480.

Organism-specific databases

TAIRi AT5G58480.

Phylogenomic databases

eggNOGi NOG266375.
HOGENOMi HOG000238221.
InParanoidi Q9FGH4.
OMAi LPNSVPR.
PhylomeDBi Q9FGH4.

Enzyme and pathway databases

BioCyci ARA:AT5G58480-MONOMER.

Gene expression databases

Genevestigatori Q9FGH4.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view ]
Pfami PF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view ]
SMARTi SM00768. X8. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. XI."
    Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., Tabata S.
    Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
    Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
    Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
  5. "Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment."
    Elortza F., Mohammed S., Bunkenborg J., Foster L.J., Nuehse T.S., Brodbeck U., Peck S.C., Jensen O.N.
    J. Proteome Res. 5:935-943(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiE139_ARATH
AccessioniPrimary (citable) accession number: Q9FGH4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: March 1, 2001
Last modified: October 29, 2014
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3