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Protein

Pentatricopeptide repeat-containing protein At5g06540

Gene

PCMP-H88

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g06540
Gene namesi
Name:PCMP-H88
Ordered Locus Names:At5g06540
ORF Names:F15M7.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G06540.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 622622Pentatricopeptide repeat-containing protein At5g06540PRO_0000363504Add
BLAST

Proteomic databases

PaxDbiQ9FG16.
PRIDEiQ9FG16.

Expressioni

Gene expression databases

GenevisibleiQ9FG16. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G06540.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FG16.
SMRiQ9FG16. Positions 80-503.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati81 – 11535PPR 1Add
BLAST
Repeati116 – 15035PPR 2Add
BLAST
Repeati151 – 18131PPR 3Add
BLAST
Repeati182 – 21231PPR 4Add
BLAST
Repeati213 – 24735PPR 5Add
BLAST
Repeati248 – 28235PPR 6Add
BLAST
Repeati283 – 31331PPR 7Add
BLAST
Repeati314 – 34835PPR 8Add
BLAST
Repeati349 – 38436PPR 9Add
BLAST
Repeati385 – 41935PPR 10Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni420 – 49576Type E motifAdd
BLAST
Regioni496 – 52732Type E(+) motifAdd
BLAST
Regioni528 – 62295Type DYW motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FG16.
OMAiEMFKGML.
PhylomeDBiQ9FG16.

Family and domain databases

InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9FG16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNIVLNTLR FKHPKLALLQ SCSSFSDLKI IHGFLLRTHL ISDVFVASRL
60 70 80 90 100
LALCVDDSTF NKPTNLLGYA YGIFSQIQNP NLFVFNLLIR CFSTGAEPSK
110 120 130 140 150
AFGFYTQMLK SRIWPDNITF PFLIKASSEM ECVLVGEQTH SQIVRFGFQN
160 170 180 190 200
DVYVENSLVH MYANCGFIAA AGRIFGQMGF RDVVSWTSMV AGYCKCGMVE
210 220 230 240 250
NAREMFDEMP HRNLFTWSIM INGYAKNNCF EKAIDLFEFM KREGVVANET
260 270 280 290 300
VMVSVISSCA HLGALEFGER AYEYVVKSHM TVNLILGTAL VDMFWRCGDI
310 320 330 340 350
EKAIHVFEGL PETDSLSWSS IIKGLAVHGH AHKAMHYFSQ MISLGFIPRD
360 370 380 390 400
VTFTAVLSAC SHGGLVEKGL EIYENMKKDH GIEPRLEHYG CIVDMLGRAG
410 420 430 440 450
KLAEAENFIL KMHVKPNAPI LGALLGACKI YKNTEVAERV GNMLIKVKPE
460 470 480 490 500
HSGYYVLLSN IYACAGQWDK IESLRDMMKE KLVKKPPGWS LIEIDGKINK
510 520 530 540 550
FTMGDDQKHP EMGKIRRKWE EILGKIRLIG YKGNTGDAFF DVDEEEKESS
560 570 580 590 600
IHMHSEKLAI AYGMMKTKPG TTIRIVKNLR VCEDCHTVTK LISEVYGREL
610 620
IVRDRNRFHH FRNGVCSCRD YW
Length:622
Mass (Da):70,495
Last modified:March 1, 2001 - v1
Checksum:iE4B041D104710727
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002543 Genomic DNA. Translation: BAB11403.1.
CP002688 Genomic DNA. Translation: AED91032.1.
RefSeqiNP_196272.1. NM_120737.1.
UniGeneiAt.65494.

Genome annotation databases

EnsemblPlantsiAT5G06540.1; AT5G06540.1; AT5G06540.
GeneIDi830542.
GrameneiAT5G06540.1; AT5G06540.1; AT5G06540.
KEGGiath:AT5G06540.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002543 Genomic DNA. Translation: BAB11403.1.
CP002688 Genomic DNA. Translation: AED91032.1.
RefSeqiNP_196272.1. NM_120737.1.
UniGeneiAt.65494.

3D structure databases

ProteinModelPortaliQ9FG16.
SMRiQ9FG16. Positions 80-503.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G06540.1.

Proteomic databases

PaxDbiQ9FG16.
PRIDEiQ9FG16.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G06540.1; AT5G06540.1; AT5G06540.
GeneIDi830542.
GrameneiAT5G06540.1; AT5G06540.1; AT5G06540.
KEGGiath:AT5G06540.

Organism-specific databases

TAIRiAT5G06540.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9FG16.
OMAiEMFKGML.
PhylomeDBiQ9FG16.

Miscellaneous databases

PROiQ9FG16.

Gene expression databases

GenevisibleiQ9FG16. AT.

Family and domain databases

InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. XI."
    Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., Tabata S.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP367_ARATH
AccessioniPrimary (citable) accession number: Q9FG16
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2001
Last modified: March 16, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.