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Q9FFN4

- BGAL6_ARATH

UniProt

Q9FFN4 - BGAL6_ARATH

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Protein

Beta-galactosidase 6

Gene

BGAL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei188 – 1881Proton donorSequence Analysis
Active sitei259 – 2591NucleophileSequence Analysis

GO - Molecular functioni

  1. beta-galactosidase activity Source: TAIR

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. mucilage biosynthetic process involved in seed coat development Source: TAIR
  3. plant-type cell wall modification Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BioCyciARA:AT5G63800-MONOMER.

Protein family/group databases

CAZyiGH35. Glycoside Hydrolase Family 35.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-galactosidase 6 (EC:3.2.1.23)
Short name:
Lactase 6
Gene namesi
Name:BGAL6
Ordered Locus Names:At5g63800
ORF Names:MBK5.28
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G63800.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: TAIR
  2. cell wall Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence AnalysisAdd
BLAST
Chaini29 – 718690Beta-galactosidase 6PRO_5000065881Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi291 – 2911N-linked (GlcNAc...)Sequence Analysis
Glycosylationi468 – 4681N-linked (GlcNAc...)Sequence Analysis
Glycosylationi538 – 5381N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9FFN4.
PRIDEiQ9FFN4.

Expressioni

Tissue specificityi

Expressed at low levels in siliques.1 Publication

Gene expression databases

ExpressionAtlasiQ9FFN4. baseline and differential.
GenevestigatoriQ9FFN4.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G63800.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9FFN4.
SMRiQ9FFN4. Positions 32-702.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 35 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1874.
HOGENOMiHOG000239919.
InParanoidiQ9FFN4.
OMAiKNGSYIN.
PhylomeDBiQ9FFN4.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR23421. PTHR23421. 1 hit.
PfamiPF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSiPR00742. GLHYDRLASE35.
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9FFN4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEMGRLVFGL CLILIVGTFL EFSGGATAAK GVTYDGRSLI IDGQRKLLFS
60 70 80 90 100
GSIHYPRSTP EMWPSLIKKT KEGGIDVIQT YVFWNLHEPK LGQYDFSGRN
110 120 130 140 150
DLVKFIKEIR SQGLYVCLRI GPFIEAEWNY GGLPFWLRDV PGMVYRTDNE
160 170 180 190 200
PFKFHMQKFT AKIVDLMKSE GLYASQGGPI ILSQIENEYA NVEGAFHEKG
210 220 230 240 250
ASYIKWAGQM AVGLKTGVPW IMCKSPDAPD PVINTCNGMK CGETFPGPNS
260 270 280 290 300
PNKPKMWTED WTSFFQVYGK EPYIRSAEDI AFHAALFVAK NGSYINYYMY
310 320 330 340 350
HGGTNFGRTS SSYFITGYYD QAPLDEYGLL RQPKYGHLKE LHAAIKSSAN
360 370 380 390 400
PLLQGKQTIL SLGPMQQAYV FEDANNGCVA FLVNNDAKAS QIQFRNNAYS
410 420 430 440 450
LSPKSIGILQ NCKNLIYETA KVNVKMNTRV TTPVQVFNVP DNWNLFRETI
460 470 480 490 500
PAFPGTSLKT NALLEHTNLT KDKTDYLWYT SSFKLDSPCT NPSIYTESSG
510 520 530 540 550
HVVHVFVNNA LAGSGHGSRD IRVVKLQAPV SLINGQNNIS ILSGMVGLPD
560 570 580 590 600
SGAYMERRSY GLTKVQISCG GTKPIDLSRS QWGYSVGLLG EKVRLYQWKN
610 620 630 640 650
LNRVKWSMNK AGLIKNRPLA WYKTTFDGPN GDGPVGLHMS SMGKGEIWVN
660 670 680 690 700
GESIGRYWVS FLTPAGQPSQ SIYHIPRAFL KPSGNLLVVF EEEGGDPLGI
710
SLNTISVVGS SQAQSQFS
Length:718
Mass (Da):79,759
Last modified:March 1, 2001 - v1
Checksum:i3AE3F384A592A5D4
GO

Sequence cautioni

The sequence CAB64742.1 differs from that shown. Reason: Frameshift at positions 453 and 457.

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti70 – 701T → A in BAF01618. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ270302 mRNA. Translation: CAB64742.1. Frameshift.
AB005234 Genomic DNA. Translation: BAB10473.1.
CP002688 Genomic DNA. Translation: AED97799.1.
AK229786 mRNA. Translation: BAF01618.1.
RefSeqiNP_568978.2. NM_125775.3.
UniGeneiAt.21611.

Genome annotation databases

EnsemblPlantsiAT5G63800.1; AT5G63800.1; AT5G63800.
GeneIDi836500.
KEGGiath:AT5G63800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ270302 mRNA. Translation: CAB64742.1 . Frameshift.
AB005234 Genomic DNA. Translation: BAB10473.1 .
CP002688 Genomic DNA. Translation: AED97799.1 .
AK229786 mRNA. Translation: BAF01618.1 .
RefSeqi NP_568978.2. NM_125775.3.
UniGenei At.21611.

3D structure databases

ProteinModelPortali Q9FFN4.
SMRi Q9FFN4. Positions 32-702.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT5G63800.1-P.

Protein family/group databases

CAZyi GH35. Glycoside Hydrolase Family 35.

Proteomic databases

PaxDbi Q9FFN4.
PRIDEi Q9FFN4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G63800.1 ; AT5G63800.1 ; AT5G63800 .
GeneIDi 836500.
KEGGi ath:AT5G63800.

Organism-specific databases

GeneFarmi 495. 90.
TAIRi AT5G63800.

Phylogenomic databases

eggNOGi COG1874.
HOGENOMi HOG000239919.
InParanoidi Q9FFN4.
OMAi KNGSYIN.
PhylomeDBi Q9FFN4.

Enzyme and pathway databases

BioCyci ARA:AT5G63800-MONOMER.

Gene expression databases

ExpressionAtlasi Q9FFN4. baseline and differential.
Genevestigatori Q9FFN4.

Family and domain databases

Gene3Di 2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR23421. PTHR23421. 1 hit.
Pfami PF01301. Glyco_hydro_35. 1 hit.
[Graphical view ]
PRINTSi PR00742. GLHYDRLASE35.
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The beta-galactosidases are encoding by a multigene family in Arabidopsis thaliana."
    Gy I., Kreis M., Lecharny A.
    Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones."
    Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M., Miyajima N., Tabata S.
    DNA Res. 4:215-230(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana."
    Iglesias N., Abelenda J.A., Rodino M., Sampedro J., Revilla G., Zarra I.
    Plant Cell Physiol. 47:55-63(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.
  6. "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35."
    Ahn Y.O., Zheng M., Bevan D.R., Esen A., Shiu S.-H., Benson J., Peng H.-P., Miller J.T., Cheng C.-L., Poulton J.E., Shih M.-C.
    Phytochemistry 68:1510-1520(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiBGAL6_ARATH
AccessioniPrimary (citable) accession number: Q9FFN4
Secondary accession number(s): Q0WMN2, Q9SCV6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: March 1, 2001
Last modified: October 29, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3