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Q9FFN4

- BGAL6_ARATH

UniProt

Q9FFN4 - BGAL6_ARATH

Protein

Beta-galactosidase 6

Gene

BGAL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 92 (01 Oct 2014)
      Sequence version 1 (01 Mar 2001)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei188 – 1881Proton donorSequence Analysis
    Active sitei259 – 2591NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: TAIR

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro
    2. mucilage biosynthetic process involved in seed coat development Source: TAIR
    3. plant-type cell wall modification Source: TAIR

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Enzyme and pathway databases

    BioCyciARA:AT5G63800-MONOMER.

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 6 (EC:3.2.1.23)
    Short name:
    Lactase 6
    Gene namesi
    Name:BGAL6
    Ordered Locus Names:At5g63800
    ORF Names:MBK5.28
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G63800.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: TAIR
    2. cell wall Source: TAIR

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2828Sequence AnalysisAdd
    BLAST
    Chaini29 – 718690Beta-galactosidase 6PRO_5000065881Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi291 – 2911N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi468 – 4681N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi538 – 5381N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PaxDbiQ9FFN4.
    PRIDEiQ9FFN4.

    Expressioni

    Tissue specificityi

    Expressed at low levels in siliques.1 Publication

    Gene expression databases

    ArrayExpressiQ9FFN4.
    GenevestigatoriQ9FFN4.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT5G63800.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9FFN4.
    SMRiQ9FFN4. Positions 32-702.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.
    HOGENOMiHOG000239919.
    InParanoidiQ9FFN4.
    OMAiKNGSYIN.
    PhylomeDBiQ9FFN4.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9FFN4-1 [UniParc]FASTAAdd to Basket

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    MEMGRLVFGL CLILIVGTFL EFSGGATAAK GVTYDGRSLI IDGQRKLLFS    50
    GSIHYPRSTP EMWPSLIKKT KEGGIDVIQT YVFWNLHEPK LGQYDFSGRN 100
    DLVKFIKEIR SQGLYVCLRI GPFIEAEWNY GGLPFWLRDV PGMVYRTDNE 150
    PFKFHMQKFT AKIVDLMKSE GLYASQGGPI ILSQIENEYA NVEGAFHEKG 200
    ASYIKWAGQM AVGLKTGVPW IMCKSPDAPD PVINTCNGMK CGETFPGPNS 250
    PNKPKMWTED WTSFFQVYGK EPYIRSAEDI AFHAALFVAK NGSYINYYMY 300
    HGGTNFGRTS SSYFITGYYD QAPLDEYGLL RQPKYGHLKE LHAAIKSSAN 350
    PLLQGKQTIL SLGPMQQAYV FEDANNGCVA FLVNNDAKAS QIQFRNNAYS 400
    LSPKSIGILQ NCKNLIYETA KVNVKMNTRV TTPVQVFNVP DNWNLFRETI 450
    PAFPGTSLKT NALLEHTNLT KDKTDYLWYT SSFKLDSPCT NPSIYTESSG 500
    HVVHVFVNNA LAGSGHGSRD IRVVKLQAPV SLINGQNNIS ILSGMVGLPD 550
    SGAYMERRSY GLTKVQISCG GTKPIDLSRS QWGYSVGLLG EKVRLYQWKN 600
    LNRVKWSMNK AGLIKNRPLA WYKTTFDGPN GDGPVGLHMS SMGKGEIWVN 650
    GESIGRYWVS FLTPAGQPSQ SIYHIPRAFL KPSGNLLVVF EEEGGDPLGI 700
    SLNTISVVGS SQAQSQFS 718
    Length:718
    Mass (Da):79,759
    Last modified:March 1, 2001 - v1
    Checksum:i3AE3F384A592A5D4
    GO

    Sequence cautioni

    The sequence CAB64742.1 differs from that shown. Reason: Frameshift at positions 453 and 457.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti70 – 701T → A in BAF01618. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270302 mRNA. Translation: CAB64742.1. Frameshift.
    AB005234 Genomic DNA. Translation: BAB10473.1.
    CP002688 Genomic DNA. Translation: AED97799.1.
    AK229786 mRNA. Translation: BAF01618.1.
    RefSeqiNP_568978.2. NM_125775.3.
    UniGeneiAt.21611.

    Genome annotation databases

    EnsemblPlantsiAT5G63800.1; AT5G63800.1; AT5G63800.
    GeneIDi836500.
    KEGGiath:AT5G63800.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270302 mRNA. Translation: CAB64742.1 . Frameshift.
    AB005234 Genomic DNA. Translation: BAB10473.1 .
    CP002688 Genomic DNA. Translation: AED97799.1 .
    AK229786 mRNA. Translation: BAF01618.1 .
    RefSeqi NP_568978.2. NM_125775.3.
    UniGenei At.21611.

    3D structure databases

    ProteinModelPortali Q9FFN4.
    SMRi Q9FFN4. Positions 32-702.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT5G63800.1-P.

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Proteomic databases

    PaxDbi Q9FFN4.
    PRIDEi Q9FFN4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G63800.1 ; AT5G63800.1 ; AT5G63800 .
    GeneIDi 836500.
    KEGGi ath:AT5G63800.

    Organism-specific databases

    GeneFarmi 495. 90.
    TAIRi AT5G63800.

    Phylogenomic databases

    eggNOGi COG1874.
    HOGENOMi HOG000239919.
    InParanoidi Q9FFN4.
    OMAi KNGSYIN.
    PhylomeDBi Q9FFN4.

    Enzyme and pathway databases

    BioCyci ARA:AT5G63800-MONOMER.

    Gene expression databases

    ArrayExpressi Q9FFN4.
    Genevestigatori Q9FFN4.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The beta-galactosidases are encoding by a multigene family in Arabidopsis thaliana."
      Gy I., Kreis M., Lecharny A.
      Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones."
      Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M., Miyajima N., Tabata S.
      DNA Res. 4:215-230(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
      , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana."
      Iglesias N., Abelenda J.A., Rodino M., Sampedro J., Revilla G., Zarra I.
      Plant Cell Physiol. 47:55-63(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY.
    6. "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35."
      Ahn Y.O., Zheng M., Bevan D.R., Esen A., Shiu S.-H., Benson J., Peng H.-P., Miller J.T., Cheng C.-L., Poulton J.E., Shih M.-C.
      Phytochemistry 68:1510-1520(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiBGAL6_ARATH
    AccessioniPrimary (citable) accession number: Q9FFN4
    Secondary accession number(s): Q0WMN2, Q9SCV6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: March 1, 2001
    Last modified: October 1, 2014
    This is version 92 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3