Q9FFN2 (GLYT3_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable glycosyltransferase At5g03795
EC=2.4.-.-

Gene names

Ordered Locus Names:	At5g03795
ORF Names:	MED24

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	518 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	May be involved in cell wall biosynthesis.
Subcellular location	Golgi apparatus membrane; Single-pass type II membrane protein By similarity.
Sequence similarities	Belongs to the glycosyltransferase 47 family.
Sequence caution	The sequence BAB08605.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Cell wall biogenesis/degradation
Cellular component	Golgi apparatus Membrane
Domain	Signal-anchor Transmembrane Transmembrane helix
Molecular function	Glycosyltransferase Transferase
PTM	Glycoprotein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cellular cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	Golgi membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	transferase activity, transferring glycosyl groups Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 518	518	Probable glycosyltransferase At5g03795		PRO_0000392294
Regions
	Topological domain	1 – 25	25	Cytoplasmic Potential
	Transmembrane	26 – 46	21	Helical; Signal-anchor for type II membrane protein; Potential
	Topological domain	47 – 518	472	Lumenal Potential
	Compositional bias	64 – 88	25	Pro-rich
Amino acid modifications
	Glycosylation	104	1	N-linked (GlcNAc...) Potential
	Glycosylation	113	1	N-linked (GlcNAc...) Potential
	Glycosylation	120	1	N-linked (GlcNAc...) Potential
	Glycosylation	282	1	N-linked (GlcNAc...) Potential
	Glycosylation	320	1	N-linked (GlcNAc...) Potential

Sequences

	Sequence		Length	Mass (Da)
	Q9FFN2 [UniParc]. Last modified March 23, 2010. Version 2. Checksum: D751FEC90A375D23	FASTA	518	58,572
	10 20 30 40 50 60 MGDEDVDGKC KNMSACSSTT SYSTKLFLFM VPLVVISGFV FVNIGPKDST SLLTSLSTTT 70 80 90 100 110 120 SHLPPPFLST APAPAPSPLL PEILPSLPAS SLSTKVESIQ GDYNRTIQLN MINVTATSNN 130 140 150 160 170 180 VSSTASLEPK KRRVLSNLEK IEFKLQKARA SIKAASMDDP VDDPDYVPLG PMYWNAKVFH 190 200 210 220 230 240 RSYLEMEKQF KIYVYKEGEP PLFHDGPCKS IYSMEGSFIY EIETDTRFRT NNPDKAHVFY 250 260 270 280 290 300 LPFSVVKMVR YVYERNSRDF SPIRNTVKDY INLVGDKYPY WNRSIGADHF ILSCHDWGPE 310 320 330 340 350 360 ASFSHPHLGH NSIRALCNAN TSERFKPRKD VSIPEINLRT GSLTGLVGGP SPSSRPILAF 370 380 390 400 410 420 FAGGVHGPVR PVLLQHWENK DNDIRVHKYL PRGTSYSDMM RNSKFCICPS GYEVASPRIV 430 440 450 460 470 480 EALYSGCVPV LINSGYVPPF SDVLNWRSFS VIVSVEDIPN LKTILTSISP RQYLRMYRRV 490 500 510 LKVRRHFEVN SPAKRFDVFH MILHSIWVRR LNVKIREV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones." Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M., Miyajima N., Tabata S. DNA Res. 4:215-230(1997) [PubMed: 9330910] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis." Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I., Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G., Willats W.G., Scheller H.V. Plant Cell 20:1289-1302(2008) [PubMed: 18460606] [Abstract] Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB005235 Genomic DNA. Translation: BAB08605.1. Sequence problems. CP002688 Genomic DNA. Translation: AED90655.1.
IPI	IPI00657117.
RefSeq	NP_001031828.1. NM_001036751.1.
UniGene	At.5383. At.75102.
3D structure databases
ProteinModelPortal	Q9FFN2.
ModBase	Search...
Protein family/group databases
CAZy	GT47. Glycosyltransferase Family 47.
Proteomic databases
PRIDE	Q9FFN2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G03795.1; AT5G03795.1; AT5G03795.
GeneID	3770626.
GenomeReviews	Gene locus AT5G03795 in contig BA000015_GR.
KEGG	ath:AT5G03795.
Organism-specific databases
TAIR	At5g03795.
Phylogenomic databases
eggNOG	KOG1021.
GeneTree	EPGT00070000028243.
HOGENOM	HBG744139.
OMA	FSVVKMV.
PhylomeDB	Q9FFN2.
ProtClustDB	CLSN2918754.
Gene expression databases
Genevestigator	Q9FFN2.
Family and domain databases
InterPro	IPR004263. Exostosin. [Graphical view]
Pfam	PF03016. Exostosin. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

GLYT3_ARATH

Accession

Primary (citable) accession number: Q9FFN2

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	December 14, 2011
This is version 42 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program