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Protein

60S ribosomal protein L13-3

Gene

RPL13D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13-3
Gene namesi
Name:RPL13D
Ordered Locus Names:At5g23900
ORF Names:MRO11.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G23900
TAIRilocus:2172863 AT5G23900

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002405151 – 20660S ribosomal protein L13-3Add BLAST206

Proteomic databases

PaxDbiQ9FF90
PRIDEiQ9FF90

PTM databases

iPTMnetiQ9FF90

Expressioni

Gene expression databases

ExpressionAtlasiQ9FF90 baseline and differential
GenevisibleiQ9FF90 AT

Interactioni

Protein-protein interaction databases

BioGridi17730, 2 interactors
STRINGi3702.AT5G23900.1

Structurei

3D structure databases

ProteinModelPortaliQ9FF90
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
HOGENOMiHOG000170452
InParanoidiQ9FF90
KOiK02873
OMAiMYLRNAR
OrthoDBiEOG09360OQA
PhylomeDBiQ9FF90

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FF90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHNNVIPSS HFRKHWQNYV KTWFNQPARK TRRRVARQKK AVKIFPRPTS
60 70 80 90 100
GPLRPVVHGQ TLKYNMKVRA GKGFTLEELK VAGIPKKLAP TIGISVDHRR
110 120 130 140 150
KNRSLEGLQS NVQRLKTYKA KLVVFPRRSR QVKAGDSTPE ELANATQVQG
160 170 180 190 200
DYMPIASVKA AMELVKLTAD LKAFKAYDKI RLERTNARHA GARAKRAAEA

EKEEKK
Length:206
Mass (Da):23,485
Last modified:March 1, 2001 - v1
Checksum:iE29C7C6C3E9C35D2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005244 Genomic DNA Translation: BAB10063.1
CP002688 Genomic DNA Translation: AED93230.1
AF378895 mRNA Translation: AAK55698.1
AY052746 mRNA Translation: AAK96460.1
RefSeqiNP_197778.1, NM_122295.4
UniGeneiAt.8750

Genome annotation databases

EnsemblPlantsiAT5G23900.1; AT5G23900.1; AT5G23900
GeneIDi832455
GrameneiAT5G23900.1; AT5G23900.1; AT5G23900
KEGGiath:AT5G23900

Similar proteinsi

Entry informationi

Entry nameiRL133_ARATH
AccessioniPrimary (citable) accession number: Q9FF90
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health