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Protein

Tryptophan aminotransferase-related protein 3

Gene

TAR3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Probable aminotransferase.By similarity

Cofactori

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei123 – 1231Pyridoxal phosphateBy similarity
Binding sitei237 – 2371Pyridoxal phosphateBy similarity
Binding sitei257 – 2571Pyridoxal phosphateBy similarity
Binding sitei291 – 2911Pyridoxal phosphateBy similarity

GO - Molecular functioni

  1. carbon-sulfur lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro
  3. transaminase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciARA:AT1G34040-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Tryptophan aminotransferase-related protein 3 (EC:2.6.1.-)
Gene namesi
Name:TAR3
Ordered Locus Names:At1g34040
ORF Names:F12G12.14, T15K4.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G34040.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2621HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 457457Tryptophan aminotransferase-related protein 3PRO_0000411676Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei283 – 2831N6-(pyridoxal phosphate)lysineSequence Analysis

Proteomic databases

PaxDbiQ9FE98.
PRIDEiQ9FE98.

Expressioni

Gene expression databases

GenevestigatoriQ9FE98.

Structurei

3D structure databases

ProteinModelPortaliQ9FE98.
SMRiQ9FE98. Positions 33-447.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni163 – 1642Pyridoxal phosphate bindingBy similarity
Regioni257 – 2604Pyridoxal phosphate bindingBy similarity
Regioni280 – 2834Pyridoxal phosphate bindingBy similarity

Sequence similaritiesi

Belongs to the alliinase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG290378.
HOGENOMiHOG000237549.
InParanoidiQ9FE98.
OMAiFLEPYWM.
PhylomeDBiQ9FE98.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
PF04863. EGF_alliinase. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FE98-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIHNKLLIAG SIILNLVFTI HILYNNTSTW SPTWTNRAAL EAEAAASVSC
60 70 80 90 100
SGHGRSYVDG LGVLDGHKPC ECHDCYTGKD CSVLLKDCPV DANSGDPLFL
110 120 130 140 150
EPFWIRKAEE SAVVESGWHR MSYTFNGYGL FMSAELEKII RKLHNVVGNA
160 170 180 190 200
VTDNRFIIFG AGATQLLAAS VHALSQTNSL SPSRLVTSVP YYNLYKQQAD
210 220 230 240 250
FFNSTNLKFE GDASAWKRSE RNDDIKQVIE IVTSPNNPDG KLKRAVLDGP
260 270 280 290 300
NVKYIHDYAY YWPYFSPITR QADEDLSLFS LSKTTGHAGS RFGWALVKEK
310 320 330 340 350
TVYEKMKIYI SLSSMGVSRD TQLRALQLLK VVIGDGGNEI FRFGYGTLKK
360 370 380 390 400
RWEILNKIFS MSTRFSLETI KPEYCNYFKK VREFTPSYAW VKCERPEDTD
410 420 430 440 450
CYEIFKAAKI TGRNGEMFGS DERFVRLSLI RSQDDFDQLI AMLKKFVSKE

AVVVDSI
Length:457
Mass (Da):51,654
Last modified:March 1, 2001 - v1
Checksum:i61C6E00B734DDE61
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015446 Genomic DNA. Translation: AAG12533.1.
AC079286 Genomic DNA. Translation: AAG12844.1.
CP002684 Genomic DNA. Translation: AEE31660.1.
PIRiC86464.
RefSeqiNP_174666.1. NM_103126.1.
UniGeneiAt.51925.

Genome annotation databases

EnsemblPlantsiAT1G34040.1; AT1G34040.1; AT1G34040.
GeneIDi840301.
KEGGiath:AT1G34040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015446 Genomic DNA. Translation: AAG12533.1.
AC079286 Genomic DNA. Translation: AAG12844.1.
CP002684 Genomic DNA. Translation: AEE31660.1.
PIRiC86464.
RefSeqiNP_174666.1. NM_103126.1.
UniGeneiAt.51925.

3D structure databases

ProteinModelPortaliQ9FE98.
SMRiQ9FE98. Positions 33-447.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ9FE98.
PRIDEiQ9FE98.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G34040.1; AT1G34040.1; AT1G34040.
GeneIDi840301.
KEGGiath:AT1G34040.

Organism-specific databases

TAIRiAT1G34040.

Phylogenomic databases

eggNOGiNOG290378.
HOGENOMiHOG000237549.
InParanoidiQ9FE98.
OMAiFLEPYWM.
PhylomeDBiQ9FE98.

Enzyme and pathway databases

BioCyciARA:AT1G34040-MONOMER.

Miscellaneous databases

PROiQ9FE98.

Gene expression databases

GenevestigatoriQ9FE98.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
PF04863. EGF_alliinase. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development."
    Stepanova A.N., Robertson-Hoyt J., Yun J., Benavente L.M., Xie D.Y., Dolezal K., Schlereth A., Juergens G., Alonso J.M.
    Cell 133:177-191(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  4. "Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants."
    Tao Y., Ferrer J.L., Ljung K., Pojer F., Hong F., Long J.A., Li L., Moreno J.E., Bowman M.E., Ivans L.J., Cheng Y., Lim J., Zhao Y., Ballare C.L., Sandberg G., Noel J.P., Chory J.
    Cell 133:164-176(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiTAR3_ARATH
AccessioniPrimary (citable) accession number: Q9FE98
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 27, 2011
Last sequence update: March 1, 2001
Last modified: April 29, 2015
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.