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Q9FE98

- TAR3_ARATH

UniProt

Q9FE98 - TAR3_ARATH

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Protein
Tryptophan aminotransferase-related protein 3
Gene
TAR3, At1g34040, F12G12.14, T15K4.10
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Probable aminotransferase By similarity.

Cofactori

Pyridoxal phosphate By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei123 – 1231Pyridoxal phosphate By similarity
Binding sitei237 – 2371Pyridoxal phosphate By similarity
Binding sitei257 – 2571Pyridoxal phosphate By similarity
Binding sitei291 – 2911Pyridoxal phosphate By similarity

GO - Molecular functioni

  1. carbon-sulfur lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro
  3. transaminase activity Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Keywords - Molecular functioni

    Aminotransferase, Transferase

    Keywords - Ligandi

    Pyridoxal phosphate

    Enzyme and pathway databases

    BioCyciARA:AT1G34040-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Tryptophan aminotransferase-related protein 3 (EC:2.6.1.-)
    Gene namesi
    Name:TAR3
    Ordered Locus Names:At1g34040
    ORF Names:F12G12.14, T15K4.10
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G34040.

    Subcellular locationi

    Topology

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei6 – 2621Helical; Reviewed prediction
    Add
    BLAST

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    Complete GO annotation...

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 457457Tryptophan aminotransferase-related protein 3
    PRO_0000411676Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei283 – 2831N6-(pyridoxal phosphate)lysine Reviewed prediction

    Proteomic databases

    PaxDbiQ9FE98.
    PRIDEiQ9FE98.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9FE98.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9FE98.
    SMRiQ9FE98. Positions 33-447.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni163 – 1642Pyridoxal phosphate binding By similarity
    Regioni257 – 2604Pyridoxal phosphate binding By similarity
    Regioni280 – 2834Pyridoxal phosphate binding By similarity

    Sequence similaritiesi

    Belongs to the alliinase family.

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG290378.
    HOGENOMiHOG000237549.
    InParanoidiQ9FE98.
    OMAiMFLEPFW.
    PhylomeDBiQ9FE98.

    Family and domain databases

    Gene3Di2.10.25.30. 1 hit.
    3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR006948. Alliinase_C.
    IPR006947. EGF_alliinase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF04864. Alliinase_C. 1 hit.
    PF04863. EGF_alliinase. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9FE98-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIHNKLLIAG SIILNLVFTI HILYNNTSTW SPTWTNRAAL EAEAAASVSC    50
    SGHGRSYVDG LGVLDGHKPC ECHDCYTGKD CSVLLKDCPV DANSGDPLFL 100
    EPFWIRKAEE SAVVESGWHR MSYTFNGYGL FMSAELEKII RKLHNVVGNA 150
    VTDNRFIIFG AGATQLLAAS VHALSQTNSL SPSRLVTSVP YYNLYKQQAD 200
    FFNSTNLKFE GDASAWKRSE RNDDIKQVIE IVTSPNNPDG KLKRAVLDGP 250
    NVKYIHDYAY YWPYFSPITR QADEDLSLFS LSKTTGHAGS RFGWALVKEK 300
    TVYEKMKIYI SLSSMGVSRD TQLRALQLLK VVIGDGGNEI FRFGYGTLKK 350
    RWEILNKIFS MSTRFSLETI KPEYCNYFKK VREFTPSYAW VKCERPEDTD 400
    CYEIFKAAKI TGRNGEMFGS DERFVRLSLI RSQDDFDQLI AMLKKFVSKE 450
    AVVVDSI 457
    Length:457
    Mass (Da):51,654
    Last modified:March 1, 2001 - v1
    Checksum:i61C6E00B734DDE61
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC015446 Genomic DNA. Translation: AAG12533.1.
    AC079286 Genomic DNA. Translation: AAG12844.1.
    CP002684 Genomic DNA. Translation: AEE31660.1.
    PIRiC86464.
    RefSeqiNP_174666.1. NM_103126.1.
    UniGeneiAt.51925.

    Genome annotation databases

    EnsemblPlantsiAT1G34040.1; AT1G34040.1; AT1G34040.
    GeneIDi840301.
    KEGGiath:AT1G34040.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC015446 Genomic DNA. Translation: AAG12533.1 .
    AC079286 Genomic DNA. Translation: AAG12844.1 .
    CP002684 Genomic DNA. Translation: AEE31660.1 .
    PIRi C86464.
    RefSeqi NP_174666.1. NM_103126.1.
    UniGenei At.51925.

    3D structure databases

    ProteinModelPortali Q9FE98.
    SMRi Q9FE98. Positions 33-447.
    ModBasei Search...

    Proteomic databases

    PaxDbi Q9FE98.
    PRIDEi Q9FE98.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G34040.1 ; AT1G34040.1 ; AT1G34040 .
    GeneIDi 840301.
    KEGGi ath:AT1G34040.

    Organism-specific databases

    TAIRi AT1G34040.

    Phylogenomic databases

    eggNOGi NOG290378.
    HOGENOMi HOG000237549.
    InParanoidi Q9FE98.
    OMAi MFLEPFW.
    PhylomeDBi Q9FE98.

    Enzyme and pathway databases

    BioCyci ARA:AT1G34040-MONOMER.

    Gene expression databases

    Genevestigatori Q9FE98.

    Family and domain databases

    Gene3Di 2.10.25.30. 1 hit.
    3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR006948. Alliinase_C.
    IPR006947. EGF_alliinase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF04864. Alliinase_C. 1 hit.
    PF04863. EGF_alliinase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    ProtoNeti Search...

    Publicationsi

    « Hide 'large scale' publications
    1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development."
      Stepanova A.N., Robertson-Hoyt J., Yun J., Benavente L.M., Xie D.Y., Dolezal K., Schlereth A., Juergens G., Alonso J.M.
      Cell 133:177-191(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.
    4. "Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants."
      Tao Y., Ferrer J.L., Ljung K., Pojer F., Hong F., Long J.A., Li L., Moreno J.E., Bowman M.E., Ivans L.J., Cheng Y., Lim J., Zhao Y., Ballare C.L., Sandberg G., Noel J.P., Chory J.
      Cell 133:164-176(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiTAR3_ARATH
    AccessioniPrimary (citable) accession number: Q9FE98
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 27, 2011
    Last sequence update: March 1, 2001
    Last modified: May 14, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3

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