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Protein

60S ribosomal protein L34-2

Gene

RPL34B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • ribosome biogenesis Source: GO_Central
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L34-2
Gene namesi
Name:RPL34B
Ordered Locus Names:At1g69620
ORF Names:F24J1.23, T6C23.18
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G69620.
TAIRilocus:2026724. AT1G69620.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • vacuolar membrane Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002454601 – 11960S ribosomal protein L34-2Add BLAST119

Proteomic databases

PaxDbiQ9FE65.
PRIDEiQ9FE65.

PTM databases

iPTMnetiQ9FE65.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FE65. baseline and differential.
GenevisibleiQ9FE65. AT.

Interactioni

Protein-protein interaction databases

BioGridi28519. 2 interactors.
STRINGi3702.AT1G69620.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FE65.
SMRiQ9FE65.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1790. Eukaryota.
COG2174. LUCA.
HOGENOMiHOG000216922.
InParanoidiQ9FE65.
KOiK02915.
OMAiKTHAFAK.
OrthoDBiEOG09360VZP.
PhylomeDBiQ9FE65.

Family and domain databases

InterProiView protein in InterPro
IPR008195. Ribosomal_L34Ae.
IPR018065. Ribosomal_L34e_CS.
PANTHERiPTHR10759. PTHR10759. 1 hit.
PfamiView protein in Pfam
PF01199. Ribosomal_L34e. 1 hit.
PRINTSiPR01250. RIBOSOMALL34.
PROSITEiView protein in PROSITE
PS01145. RIBOSOMAL_L34E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FE65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR
60 70 80 90 100
IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
110
KIVKKVLKLQ KAKEKVAPK
Length:119
Mass (Da):13,650
Last modified:March 1, 2001 - v1
Checksum:i9116C7E50F46E627
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC013289 Genomic DNA. Translation: AAG52537.1.
AC021046 Genomic DNA. Translation: AAG12705.1.
CP002684 Genomic DNA. Translation: AEE34956.1.
AF324703 mRNA. Translation: AAG40054.1.
AF327531 mRNA. Translation: AAG42912.1.
AF349526 mRNA. Translation: AAK15573.1.
AF446885 mRNA. Translation: AAL38618.1.
AY052720 mRNA. Translation: AAK96624.1.
AY085544 mRNA. Translation: AAM62768.1.
PIRiH96717.
RefSeqiNP_177120.1. NM_105630.4.
UniGeneiAt.25156.

Genome annotation databases

EnsemblPlantsiAT1G69620.1; AT1G69620.1; AT1G69620.
GeneIDi843298.
GrameneiAT1G69620.1; AT1G69620.1; AT1G69620.
KEGGiath:AT1G69620.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL342_ARATH
AccessioniPrimary (citable) accession number: Q9FE65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: March 1, 2001
Last modified: June 7, 2017
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families