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Protein

60S ribosomal protein L34-2

Gene

RPL34B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • ribosome biogenesis Source: GO_Central
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L34-2
Gene namesi
Name:RPL34B
Ordered Locus Names:At1g69620
ORF Names:F24J1.23, T6C23.18
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRilocus:2026724. AT1G69620.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • vacuolar membrane Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002454601 – 11960S ribosomal protein L34-2Add BLAST119

Proteomic databases

PaxDbiQ9FE65.
PRIDEiQ9FE65.

PTM databases

iPTMnetiQ9FE65.

Expressioni

Gene expression databases

ExpressionAtlasiQ9FE65. baseline and differential.
GenevisibleiQ9FE65. AT.

Interactioni

Protein-protein interaction databases

BioGridi28519. 2 interactors.
STRINGi3702.AT1G69620.1.

Structurei

3D structure databases

ProteinModelPortaliQ9FE65.
SMRiQ9FE65.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1790. Eukaryota.
COG2174. LUCA.
HOGENOMiHOG000216922.
InParanoidiQ9FE65.
KOiK02915.
OMAiKTHAFAK.
OrthoDBiEOG09360VZP.
PhylomeDBiQ9FE65.

Family and domain databases

InterProiView protein in InterPro
IPR008195. Ribosomal_L34Ae.
IPR018065. Ribosomal_L34e_CS.
PANTHERiPTHR10759. PTHR10759. 1 hit.
PfamiView protein in Pfam
PF01199. Ribosomal_L34e. 1 hit.
PRINTSiPR01250. RIBOSOMALL34.
PROSITEiView protein in PROSITE
PS01145. RIBOSOMAL_L34E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9FE65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQRLVYRSR HSYATKSNQH RIVKTPGGKL TYQTTKKRAS GPKCPVTGKR
60 70 80 90 100
IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG VLSGSAVRER IIRAFLVEEQ
110
KIVKKVLKLQ KAKEKVAPK
Length:119
Mass (Da):13,650
Last modified:March 1, 2001 - v1
Checksum:i9116C7E50F46E627
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC013289 Genomic DNA. Translation: AAG52537.1.
AC021046 Genomic DNA. Translation: AAG12705.1.
CP002684 Genomic DNA. Translation: AEE34956.1.
AF324703 mRNA. Translation: AAG40054.1.
AF327531 mRNA. Translation: AAG42912.1.
AF349526 mRNA. Translation: AAK15573.1.
AF446885 mRNA. Translation: AAL38618.1.
AY052720 mRNA. Translation: AAK96624.1.
AY085544 mRNA. Translation: AAM62768.1.
PIRiH96717.
RefSeqiNP_177120.1. NM_105630.4.
UniGeneiAt.25156.

Genome annotation databases

EnsemblPlantsiAT1G69620.1; AT1G69620.1; AT1G69620.
GeneIDi843298.
GrameneiAT1G69620.1; AT1G69620.1; AT1G69620.
KEGGiath:AT1G69620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC013289 Genomic DNA. Translation: AAG52537.1.
AC021046 Genomic DNA. Translation: AAG12705.1.
CP002684 Genomic DNA. Translation: AEE34956.1.
AF324703 mRNA. Translation: AAG40054.1.
AF327531 mRNA. Translation: AAG42912.1.
AF349526 mRNA. Translation: AAK15573.1.
AF446885 mRNA. Translation: AAL38618.1.
AY052720 mRNA. Translation: AAK96624.1.
AY085544 mRNA. Translation: AAM62768.1.
PIRiH96717.
RefSeqiNP_177120.1. NM_105630.4.
UniGeneiAt.25156.

3D structure databases

ProteinModelPortaliQ9FE65.
SMRiQ9FE65.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi28519. 2 interactors.
STRINGi3702.AT1G69620.1.

PTM databases

iPTMnetiQ9FE65.

Proteomic databases

PaxDbiQ9FE65.
PRIDEiQ9FE65.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G69620.1; AT1G69620.1; AT1G69620.
GeneIDi843298.
GrameneiAT1G69620.1; AT1G69620.1; AT1G69620.
KEGGiath:AT1G69620.

Organism-specific databases

AraportiAT1G69620.
TAIRilocus:2026724. AT1G69620.

Phylogenomic databases

eggNOGiKOG1790. Eukaryota.
COG2174. LUCA.
HOGENOMiHOG000216922.
InParanoidiQ9FE65.
KOiK02915.
OMAiKTHAFAK.
OrthoDBiEOG09360VZP.
PhylomeDBiQ9FE65.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q9FE65.

Gene expression databases

ExpressionAtlasiQ9FE65. baseline and differential.
GenevisibleiQ9FE65. AT.

Family and domain databases

InterProiView protein in InterPro
IPR008195. Ribosomal_L34Ae.
IPR018065. Ribosomal_L34e_CS.
PANTHERiPTHR10759. PTHR10759. 1 hit.
PfamiView protein in Pfam
PF01199. Ribosomal_L34e. 1 hit.
PRINTSiPR01250. RIBOSOMALL34.
PROSITEiView protein in PROSITE
PS01145. RIBOSOMAL_L34E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL342_ARATH
AccessioniPrimary (citable) accession number: Q9FE65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: March 1, 2001
Last modified: June 7, 2017
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.