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Protein

60S ribosomal protein L22-3

Gene

RPL22C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L22-3
Gene namesi
Name:RPL22C
Ordered Locus Names:At5g27770
ORF Names:T1G16.100
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G27770
TAIRilocus:2180260 AT5G27770

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002155121 – 12460S ribosomal protein L22-3Add BLAST124

Proteomic databases

PaxDbiQ9FE58
PRIDEiQ9FE58

PTM databases

iPTMnetiQ9FE58

Expressioni

Gene expression databases

ExpressionAtlasiQ9FE58 baseline and differential
GenevisibleiQ9FE58 AT

Interactioni

Protein-protein interaction databases

BioGridi18113, 1 interactor
STRINGi3702.AT5G27770.1

Structurei

3D structure databases

ProteinModelPortaliQ9FE58
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3434 Eukaryota
ENOG4111UVJ LUCA
HOGENOMiHOG000198396
InParanoidiQ9FE58
KOiK02891
OMAiFEQFLWE
OrthoDBiEOG09360W3V
PhylomeDBiQ9FE58

Family and domain databases

Gene3Di3.30.1360.210, 1 hit
InterProiView protein in InterPro
IPR002671 Ribosomal_L22e
IPR038526 Ribosomal_L22e_sf
PANTHERiPTHR10064 PTHR10064, 1 hit
PfamiView protein in Pfam
PF01776 Ribosomal_L22e, 1 hit

Sequencei

Sequence statusi: Complete.

Q9FE58-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRGNAAAAK GKKKGVSFTI DCSKPVDDKI MEIASLEKFL QERIKVGGKA
60 70 80 90 100
GALGDSVSIT REKSKITVTA DGQFSKRYLK YLTKKYLKKH NVRDWLRVIA
110 120
ANKDRNLYEL RYFNIAENEA EEED
Length:124
Mass (Da):14,047
Last modified:March 1, 2001 - v1
Checksum:i9B9334F48689D6AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069556 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED93723.1
AF324721 mRNA Translation: AAG40072.1
AF326858 mRNA Translation: AAG41440.1
AF339681 mRNA Translation: AAK00363.1
BT003099 mRNA Translation: AAO24531.1
AY085926 mRNA Translation: AAM63138.1
RefSeqiNP_198129.1, NM_122659.4
UniGeneiAt.16919

Genome annotation databases

EnsemblPlantsiAT5G27770.1; AT5G27770.1; AT5G27770
GeneIDi832839
GrameneiAT5G27770.1; AT5G27770.1; AT5G27770
KEGGiath:AT5G27770

Similar proteinsi

Entry informationi

Entry nameiRL223_ARATH
AccessioniPrimary (citable) accession number: Q9FE58
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: March 1, 2001
Last modified: April 25, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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