Q9FDJ9 (Q9FDJ9_9FIRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cellulosomal scaffoldin EMBL AAG01230.2

Gene names

Name:

scaA EMBL AAG01230.2

Organism

Bacteroides cellulosolvens EMBL AAG01230.2

Taxonomic identifier

35825 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Ruminococcaceae › unclassified Ruminococcaceae

Protein attributes

Sequence length	2319 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

Ontologies

Keywords
Domain	Signal EMBL AAG01230.2
Technical term	3D-structure PDB 1TYJ PDB 2XBT
Gene Ontology (GO)
Biological process	polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	extrachromosomal circular DNA Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 27	27	Potential EMBL AAG01230.2
	Chain	28 – 2319	2292	cellulosomal scaffoldin EMBL AAG01230.2		PRO_5000057723

Sequences

	Sequence		Length	Mass (Da)
	Q9FDJ9 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: 1BFD22BBCB8D9254	FASTA	2,319	245,334
	10 20 30 40 50 60 MRTKRLLAVL LTTLLLLGSV FTNVSLAAAA LSISVTLDKT TASVGDIITA TISANGIQNF 70 80 90 100 110 120 AGYQANVKYD PAVLQPVYSA TEPYDGSSVP EYGTLLQKRY SPTDMGANDL ANGSLTFGRT 130 140 150 160 170 180 YMNLSGYMNP GSSESTGTLA IIKFKVLKKA STQIKLQNAA SLTNAVDGTM VFDWTGAQLS 190 200 210 220 230 240 NYSVERAPVL NDDGTKPSVA PTTAPTTVKP TAGPTSPVRP IDSGVTVEVD KTDAKVGDII 250 260 270 280 290 300 TATINVKNIN GFAGYQANLK YNPAVLQPVY EDGTAYDNAS APEYGKLLQK RYSPTDMASN 310 320 330 340 350 360 DITKGTLTFG RTYMNLDSYK NSGAAEKEGS IAVIRFKVLK VEATTITLQN AASLTNAVDG 370 380 390 400 410 420 TMLFDWTGAQ LAGYRVQQAP SINGVVVTTT PLPTVSTVPS TTPLTGSGVE ATVDKTTASV 430 440 450 460 470 480 GDIITYTISV KDIAGFAGYQ ANVKYDPSVL KPVYEDGTEY DNAAVPDYGK LLQKRYSPTD 490 500 510 520 530 540 MASNDLSKGT LTFGRTYMNL DSYKASGSAE TSGSIAVIRF KVLKNTATTI KLQNAASLTN 550 560 570 580 590 600 AVDGTMLFDW SGAQLAGYKV AQAPSINGVV VETPVPTVSL PPSQTIGSGV TATVDKTTAS 610 620 630 640 650 660 VGDIITYTIN VKDVAGFAGY QANVKYDPSV LQPVYDDRSA YDSAAVPEYG TLLQKRYSPT 670 680 690 700 710 720 DMASNDLSKG TLTFGRTYMN LDSYKASGSA ETTGSIAVIR FKVLKNTATT IKLQNAASLT 730 740 750 760 770 780 NAVDGTMLFD WSGAQLAGYK VAQAPSINGV VVETPVPTVS VPPSQIPGSG VVATVDKTTA 790 800 810 820 830 840 SVGDIITYTI NVKDVAGFAG YQANVKYDPA VLQPVYDDGT AYDSAAVPEY GTLLQKRYSP 850 860 870 880 890 900 TDMASNDLSK GTLTFGRTYM ALDSYKASGS AETTGSIAVI RFKVLRSTAT AILLQNAASL 910 920 930 940 950 960 TNAVDGTMLF DWTGAQLKGY KVAQASSING TVTPTKPGNT PTITKPATPT KPANTPTPVQ 970 980 990 1000 1010 1020 VNSDLKLLFS NNGAAASSNQ ICMNMKLQNT GSSTYDLSKI TIRYFYTSDD DKALTYYSDY 1030 1040 1050 1060 1070 1080 VSIGSASATF NNLSPVHAKA NKYIEIKLAS GTLGAAGAQW PSQSEVTIQG RVAKADWTNV 1090 1100 1110 1120 1130 1140 DQSNDYSYPG SMSQFGENKL VAVYYNGALV YGTPPPTGPE NTPTDRPTST PTKPKNTPTP 1150 1160 1170 1180 1190 1200 TKNTSTPIDG TVELSLDKTT AGVGDIITAT LKINKIPGFA GYQANIKYDP AALTPVYSDG 1210 1220 1230 1240 1250 1260 TAYDDAAVPE YGDLLQKRYS PTDMAANDVA KGTLTFGRTY MALDSYKASG SAETTGSIAV 1270 1280 1290 1300 1310 1320 IRFKVLKSTG STSIKLENAA SLTNAVDGTM LFDWTGAQLG GYTVKQASTI KLGSGVTKGE 1330 1340 1350 1360 1370 1380 VFVTLDKSTA AAGDIVTATI NVKEFDVISG YQANIKYDPS ALQPVYSDGT AYDSSSVPES 1390 1400 1410 1420 1430 1440 GDLLQKRYSP TDMASNDLTK GTLTFGRTYM NLASYKTAGV KENTGSIAKI SFKVLKSGPV 1450 1460 1470 1480 1490 1500 SILLADSPSL TNAITGTMMF DWDGVQLDNY KVTQAGGSTT SPTPTQGITK GEVFVTLDKT 1510 1520 1530 1540 1550 1560 KAAVGDIITA TINVKDFDSV AGYQASVKYD PAVLQPVYSD GTAYDNSSVP EYGKLLQKRY 1570 1580 1590 1600 1610 1620 SPTDMGANDT ANGILTFGRT YMNLSGYKAS GVAEKEGSIA VISFKVLKAT ETKVLLKNVP 1630 1640 1650 1660 1670 1680 SLTSPVDGTM VFDWDGVQLA DYKVTQAPAV NAPVVVTPTP TTVSATPTTA TATPTPTKVN 1690 1700 1710 1720 1730 1740 TKGEVFVTLD KTTAAVGDII TATINVKDFD SVAGYQANIK FDPAVLKPVY SDGTAYDNSS 1750 1760 1770 1780 1790 1800 VPEYGKLLQK RYSPTDMGAN NLENGILTFG RTYMNMAGYK ASGVAEKEGS IAVISFKVLK 1810 1820 1830 1840 1850 1860 ATETKIELKN VPSLTSPVDG TMVFDWDGVQ LANYKVTQAP VVNGPVVVTP TPTTVSATPT 1870 1880 1890 1900 1910 1920 TATATPTPTK VNTKGEVFVT LDKTTAAVGD IITATINVKD FDSVAGYQAN IKFDPAVLKP 1930 1940 1950 1960 1970 1980 VYSDGTAYDN SSVPEYGKLL QKRYSPTDMG ANNLENGILT FGRTYMNMAG YKASGVAEKE 1990 2000 2010 2020 2030 2040 GSIAVISFKV LKATETKIEL TNVPSLTNPV DGTMVFDWDG TQLANYKVTQ APAVNAPVVV 2050 2060 2070 2080 2090 2100 TPTPTTATAT PTTATATPTT ATATPTPTTP VDGSVLTAID NDKVAVGDKV TLTINVDKIT 2110 2120 2130 2140 2150 2160 NFSGYQFNIK YNTTYLQPWD TIADEAYTDS TMPDYGTLLQ GRFNATDMSK HNLSQGVLNF 2170 2180 2190 2200 2210 2220 GRLYMNLSAY RASGKPESTG AVAKVTFKVI KEIPAEGIKL ATFENGSSMN NAVDGTMLFD 2230 2240 2250 2260 2270 2280 WDGNMYSSSA YKVVQPGLIY PKGTATVLYG DVDNDGNVDS DDYAYMRQWL IGMIADFPGG 2290 2300 2310 DIGLANADVD GDGNVDSDDY AYMRQWLIGM ISEFPAEQK

References

[1]	"A scaffoldin of the Bacteroides cellulosolvens cellulosome that contains 11 type II cohesins." Ding S.Y., Bayer E.A., Steiner D., Shoham Y., Lamed R. J. Bacteriol. 182:4915-4925(2000) [PubMed: 10940036] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase." Xu Q., Bayer E.A., Goldman M., Kenig R., Shoham Y., Lamed R. J. Bacteriol. 186:968-977(2004) [PubMed: 14761991] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	Ding S.-Y., Bayer E.A., Shoham Y., Steiner D., Lamed R. Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	Xu Q., Bayer E.A., Goldman M., Kenig R., Shoham Y., Lamed R. Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements." Noach I., Frolow F., Jakoby H., Rosenheck S., Shimon L.W., Lamed R., Bayer E.A. J. Mol. Biol. 348:1-12(2005) [PubMed: 15808849] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 2073-2242.
[6]	"Structure of a Scaffoldin Carbohydrate-Binding Module Family 3Bfrom the Cellulosome of Bacteroides Cellulosolvens: Structural Diversity and Implications for Carbohydrate Binding." Yaniv O., Shimon L.J.W., Bayer E.A., Lamed R., Frolow F. Submitted (APR-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.83 ANGSTROMS) OF 958-1115.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF224509 Genomic DNA. Translation: AAG01230.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1TYJ	X-ray	1.60	A	2073-2242	[»]
2XBT	X-ray	1.83	A	958-1115	[»]

ProteinModelPortal

Q9FDJ9.

SMR

Q9FDJ9. Positions 2073-2242.

ModBase

Search...

Protein family/group databases

CAZy

CBM3. Carbohydrate-Binding Module Family 3.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR008965. Carb-bd_dom.
IPR001956. CBD_3.
IPR016134. Cellulos_enz_dockerin_1.
IPR002102. Cohesin_dom.
IPR018452. Cohesin_dom_subgr.
IPR001434. DUF11.
IPR018247. EF_Hand_1_Ca_BS.
[Graphical view]

Gene3D

G3DSA:2.60.40.710. CBD_3. 1 hit.
G3DSA:1.10.1330.10. Cellulos_enz_dockerin_1. 1 hit.
G3DSA:2.60.40.680. Cohesin. 11 hits.

Pfam

PF00942. CBM_3. 1 hit.
PF00963. Cohesin. 11 hits.
[Graphical view]

SMART

SM01067. CBM_3. 1 hit.
[Graphical view]

SUPFAM

SSF49384. Cellul_bind. 12 hits.
SSF63446. Cellulos_enz_dockerin_1. 1 hit.

TIGRFAMs

TIGR01451. B_ant_repeat. 1 hit.

PROSITE

PS51172. CBM3. 1 hit.
PS00018. EF_HAND_1. 2 hits.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9FDJ9_9FIRM

Accession

Primary (citable) accession number: Q9FDJ9

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2004
Last modified:	January 25, 2012
This is version 58 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)