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Protein
Submitted name:

Toxin HicA

Gene

ycfA

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Toxin HicAImported
Submitted name:
Uncharacterized proteinImported
Submitted name:
YcfA proteinImported
Submitted name:
YcfA-like proteinImported
Gene namesi
Name:ycfAImported
ORF Names:ABW50_21580Imported, ACU68_07335Imported, AGA26_26095Imported, ERS139266_04739Imported, M55_030Imported, pHNAH46_029Imported, SK83_05106Imported, UC41_18830Imported, UN91_01205Imported, WQ99_20155Imported
Encoded oniPlasmid R721Imported
Plasmid pCTXM64_C0967Imported
Plasmid pHN1122-1Imported
Plasmid pHNAH46-1Imported
Plasmid pHNLDH19Imported
Plasmid pHNY2Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000037622 Componenti: Unassembled WGS sequence
  • UP000050409 Componenti: Unassembled WGS sequence
  • UP000043047 Componenti: Unassembled WGS sequence
  • UP000036158 Componenti: Unassembled WGS sequence
  • UP000032456 Componenti: Unassembled WGS sequence
  • UP000033371 Componenti: Unassembled WGS sequence
  • UP000035483 Componenti: Unassembled WGS sequence
  • UP000037617 Componenti: Unassembled WGS sequence

Family & Domainsi

Family and domain databases

InterProiIPR012933. HicA_mRNA_interferase.
[Graphical view]
PfamiPF07927. HicA_toxin. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9F561-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSADLLKEL IAAGCELKRH KASSHQIWWS PITGKTFPVP HPKKDLPLGT
60
VRSIKKMAGI
Length:60
Mass (Da):6,648
Last modified:March 1, 2001 - v1
Checksum:i445459A1D52E371C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JN797501 Genomic DNA. Translation: AFB76440.1.
KF601686 Genomic DNA. Translation: AIR75064.1.
KJ020576 Genomic DNA. Translation: AIT41613.1.
KM207012 Genomic DNA. Translation: AIT41704.1.
KP091735 Genomic DNA. Translation: AJL34816.1.
AP002527 Genomic DNA. Translation: BAB12616.1.
CYFC01000034 Genomic DNA. Translation: CTY76348.1.
JYEF01000079 Genomic DNA. Translation: KJH06133.1.
JZDZ01000021 Genomic DNA. Translation: KJW54262.1.
LDDN01000062 Genomic DNA. Translation: KLH47336.1.
LEUK01000034 Genomic DNA. Translation: KLX79178.1.
LHCQ01000079 Genomic DNA. Translation: KNY67644.1.
LDVY01000117 Genomic DNA. Translation: KOQ98853.1.
LEAE01000053 Genomic DNA. Translation: KPP25115.1.
RefSeqiNP_065323.1. NC_002525.1.
WP_000833470.1. NZ_LMBJ01000041.1.
YP_007443186.1. NC_020270.1.

Genome annotation databases

EnsemblBacteriaiKJA00093; KJA00093; UH27_19705.
KJH06133; KJH06133; UC41_18830.
KJW54262; KJW54262; UN91_01205.
KLH47336; KLH47336; WQ99_20155.
GeneIDi1238747.
14568870.
KEGGipg:1238747.
pg:14568870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JN797501 Genomic DNA. Translation: AFB76440.1.
KF601686 Genomic DNA. Translation: AIR75064.1.
KJ020576 Genomic DNA. Translation: AIT41613.1.
KM207012 Genomic DNA. Translation: AIT41704.1.
KP091735 Genomic DNA. Translation: AJL34816.1.
AP002527 Genomic DNA. Translation: BAB12616.1.
CYFC01000034 Genomic DNA. Translation: CTY76348.1.
JYEF01000079 Genomic DNA. Translation: KJH06133.1.
JZDZ01000021 Genomic DNA. Translation: KJW54262.1.
LDDN01000062 Genomic DNA. Translation: KLH47336.1.
LEUK01000034 Genomic DNA. Translation: KLX79178.1.
LHCQ01000079 Genomic DNA. Translation: KNY67644.1.
LDVY01000117 Genomic DNA. Translation: KOQ98853.1.
LEAE01000053 Genomic DNA. Translation: KPP25115.1.
RefSeqiNP_065323.1. NC_002525.1.
WP_000833470.1. NZ_LMBJ01000041.1.
YP_007443186.1. NC_020270.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKJA00093; KJA00093; UH27_19705.
KJH06133; KJH06133; UC41_18830.
KJW54262; KJW54262; UN91_01205.
KLH47336; KLH47336; WQ99_20155.
GeneIDi1238747.
14568870.
KEGGipg:1238747.
pg:14568870.

Family and domain databases

InterProiIPR012933. HicA_mRNA_interferase.
[Graphical view]
PfamiPF07927. HicA_toxin. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the R721 shufflon."
    Kim S., Komano T.
    J. Bacteriol. 174:7053-7058(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12Imported.
    Plasmid: R721
  2. "Organization and diversification of plasmid genomes: complete nucleotide sequence of the R721 genome."
    Sampei G., Motomura K., Masuda S., Yamaguchi T., Ando K., Oishi T., Furuya N., Komano T., Mizobuchi K.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12Imported.
    Plasmid: R721
  3. Liu J.-H., He L., He D.
    Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 1122Imported.
    Plasmid: pHN1122-1
  4. "Genetic Characterization of IncI2 Plasmids Carrying blaCTX-M-55 Spreading in both Pets and Food Animals in China."
    Lv L., Partridge S.R., He L., Zeng Z., He D., Ye J., Liu J.H.
    Antimicrob. Agents Chemother. 57:2824-2827(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 1122Imported.
    Plasmid: pHN1122-1
  5. "completed sequence of plasmid pHNAH46-1."
    Liu J., He D., Li Q.
    Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AHC46Imported.
    Plasmid: pHNAH46-1
  6. Liu J.-H., He D., Lv L., Li Q.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JC2Imported.
    Plasmid: pHNY2
  7. Ho P.L., Liu C.J., Lai E.L., Lo W.U., Law P.Y., Chow K.H.
    Submitted (NOV-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C0967Imported.
    Plasmid: pCTXM64_C0967
  8. "Sequence of plasmid pHNLDH19."
    Liu J., He D., Lv L., Chen X.
    Submitted (DEC-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LDH19Imported.
    Plasmid: pHNLDH19
  9. "blaCTX-M-1/9/1 Hybrid Genes May Have Been Generated from blaCTX-M-15 on an IncI2 Plasmid."
    Liu L., He D., Lv L., Liu W., Chen X., Zeng Z., Partridge S.R., Liu J.H.
    Antimicrob. Agents Chemother. 59:4464-4470(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AHC46Imported, JC2Imported and LDH19Imported.
    Plasmid: pHNAH46-1 pHNLDH19 pHNY2
  10. "Prevalence and characterization of hybrid blaCTX-M among Escherichia coli isolates from livestock and other animals."
    Ho P.-L., Liu M.C., Lo W.-U., Lai E.L., Lau T.C., Law O.-K., Chow K.-H.
    Diagn. Microbiol. Infect. Dis. 0:0-0(2015)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C0967Imported.
    Plasmid: pCTXM64_C0967
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CO6CE900Imported.
  12. "Genome sequence of Escherichia coli strain D2-2."
    Olsen R.H., Bisgaard M., Christensen J.P., Christensen H., Thofner I., Pors S.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D2-2Imported.
  13. "Genome sequences of 11 non-O157 Shiga Toxin-Producing Escherichia coli strains."
    Gabrielsen C., Drablos F., Afset J.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: St. Olav173Imported.
  14. "Whole genome shotgun sequencing of cultured foodborne pathogen."
    Timme R., Allard M.W., Strain E., Evans P.S., Toro M., Gonzalez-Escalona N., Brown E.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFSAN026838Imported.
  15. "Comparative genomics of non-pseudomonal bacterial species colonizing pediatric cystic fibrosis patients."
    Ormerod K.L., Fraser J.A., Wainwright C., Hugenholtz P.
    Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C8Imported.
  16. "Utilizing next-generation sequencing to resolve the backbone and inform taxonomy of the Core Goodeniaceae."
    Michener P.S., Gardner A.G., Jabaily R.S., Sessa E.
    Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C8Imported.
  17. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BIDMC106Imported.
  18. "Genome sequences of 64 non-O157:H7 Shiga toxin-producing Escherichia coli strains."
    Gonzalez-Escalona N., Toro M., Timme R., Payne J.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFSAN026806Imported.
  19. "Complete DNA Sequence of Pseudomonas syringae pv. actinidiae, the Causal Agent of Kiwifruit Canker Disease."
    Rikkerink E.H.A., Fineran P.C.
    Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 201350Imported.

Entry informationi

Entry nameiQ9F561_ECOLX
AccessioniPrimary (citable) accession number: Q9F561
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: April 13, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.