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Protein
Submitted name:

Uncharacterized protein

Gene

ycfA

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. hydrolase activity, acting on ester bonds Source: InterPro
  2. mRNA binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Submitted name:
YcfA proteinImported
Gene namesi
Name:ycfAImported
ORF Names:M55_030Imported, pHNAH46_029Imported
Encoded oniPlasmid R721Imported
Plasmid pHN1122-1Imported
Plasmid pHNAH46-1Imported
Plasmid pHNLDH19Imported
Plasmid pHNY2Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Family & Domainsi

Family and domain databases

InterProiIPR012933. HicA_mRNA_interferase.
IPR015146. RNR_stirrup.
[Graphical view]
PfamiPF07927. YcfA. 1 hit.
[Graphical view]
SUPFAMiSSF54786. SSF54786. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9F561-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSADLLKEL IAAGCELKRH KASSHQIWWS PITGKTFPVP HPKKDLPLGT
60
VRSIKKMAGI
Length:60
Mass (Da):6,648
Last modified:February 28, 2001 - v1
Checksum:i445459A1D52E371C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JN797501 Genomic DNA. Translation: AFB76440.1.
KF601686 Genomic DNA. Translation: AIR75064.1.
KJ020576 Genomic DNA. Translation: AIT41613.1.
KM207012 Genomic DNA. Translation: AIT41704.1.
AP002527 Genomic DNA. Translation: BAB12616.1.
RefSeqiNP_065323.1. NC_002525.1.
YP_007443186.1. NC_020270.1.

Genome annotation databases

GeneIDi1238747.
14568870.
KEGGipg:1238747.
pg:14568870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JN797501 Genomic DNA. Translation: AFB76440.1.
KF601686 Genomic DNA. Translation: AIR75064.1.
KJ020576 Genomic DNA. Translation: AIT41613.1.
KM207012 Genomic DNA. Translation: AIT41704.1.
AP002527 Genomic DNA. Translation: BAB12616.1.
RefSeqiNP_065323.1. NC_002525.1.
YP_007443186.1. NC_020270.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1238747.
14568870.
KEGGipg:1238747.
pg:14568870.

Family and domain databases

InterProiIPR012933. HicA_mRNA_interferase.
IPR015146. RNR_stirrup.
[Graphical view]
PfamiPF07927. YcfA. 1 hit.
[Graphical view]
SUPFAMiSSF54786. SSF54786. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Nucleotide sequence of the R721 shufflon."
    Kim S., Komano T.
    J. Bacteriol. 174:7053-7058(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12Imported.
    Plasmid: R721
  2. "Organization and diversification of plasmid genomes: complete nucleotide sequence of the R721 genome."
    Sampei G., Motomura K., Masuda S., Yamaguchi T., Ando K., Oishi T., Furuya N., Komano T., Mizobuchi K.
    Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12Imported.
    Plasmid: R721
  3. Liu J.-H., He L., He D.
    Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 1122Imported.
    Plasmid: pHN1122-1
  4. "Genetic Characterization of IncI2 Plasmids Carrying blaCTX-M-55 Spreading in both Pets and Food Animals in China."
    Lv L., Partridge S.R., He L., Zeng Z., He D., Ye J., Liu J.H.
    Antimicrob. Agents Chemother. 57:2824-2827(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 1122Imported.
    Plasmid: pHN1122-1
  5. "completed sequence of plasmid pHNAH46-1."
    Liu J., He D., Li Q.
    Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AHC46Imported.
    Plasmid: pHNAH46-1
  6. Liu J.-H., He D., Lv L., Li Q.
    Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JC2Imported.
    Plasmid: pHNY2
  7. "Sequence of plasmid pHNLDH19."
    Liu J., He D., Lv L., Chen X.
    Submitted (NOV-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LDH19Imported.
    Plasmid: pHNLDH19

Entry informationi

Entry nameiQ9F561_ECOLX
AccessioniPrimary (citable) accession number: Q9F561
Entry historyi
Integrated into UniProtKB/TrEMBL: February 28, 2001
Last sequence update: February 28, 2001
Last modified: March 31, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.