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Q9EQF5 (DPYS_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 106. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Dihydropyrimidinase

Short name=DHP
Short name=DHPase
EC=3.5.2.2
Alternative name(s):
Dihydropyrimidine amidohydrolase
Hydantoinase
Gene names
Name:Dpys
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length519 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyze the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate By similarity.

Catalytic activity

5,6-dihydrouracil + H2O = 3-ureidopropanoate.

Cofactor

Binds 2 zinc ions per subunit By similarity.

Subunit structure

Homotetramer By similarity.

Post-translational modification

Carbamylation allows a single lysine to coordinate two zinc ions By similarity.

Sequence similarities

Belongs to the DHOase family. Hydantoinase/dihydropyrimidinase subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 519519Dihydropyrimidinase
PRO_0000165907

Sites

Metal binding671Zinc 1 By similarity
Metal binding691Zinc 1 By similarity
Metal binding1591Zinc 1; via carbamate group By similarity
Metal binding1591Zinc 2; via carbamate group By similarity
Metal binding1921Zinc 2 By similarity
Metal binding2481Zinc 2 By similarity
Metal binding3261Zinc 1 By similarity
Binding site1641Substrate By similarity
Binding site3471Substrate; via carbonyl oxygen By similarity

Amino acid modifications

Modified residue1591N6-carboxylysine By similarity
Modified residue2561N6-succinyllysine Ref.5

Experimental info

Sequence conflict131R → L in AAG37999. Ref.1
Sequence conflict131R → L in AAH37086. Ref.4
Sequence conflict371R → P in AAK00644. Ref.2
Sequence conflict431E → G in AAK00644. Ref.2
Sequence conflict2061M → T in BAB23654. Ref.3
Sequence conflict2991P → L in AAK00644. Ref.2
Sequence conflict3661S → N in AAK00644. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q9EQF5 [UniParc].

Last modified June 6, 2002. Version 2.
Checksum: F2C53D40EC120ABD

FASTA51956,725
        10         20         30         40         50         60 
MAPQGRLLIR GGRIVNDDFS QVADVLVEDG VVRALGRDLL PPEDASRGLR ILDAAGKLVL 

        70         80         90        100        110        120 
PGGIDTHTHM QFPFMGSQSV DDFYQGTKAA LAGGTTMIID FAIPQKGSSL IEAFETWRNW 

       130        140        150        160        170        180 
ADPKVCCDYS LHVAVTWWSD KVKEEMKTLA RDKGVNSFKM FMAYKGLYMV QDEQLYAAFS 

       190        200        210        220        230        240 
QCKEIGAIAQ VHAENGDLIA EGAKKMLALG ITGPEGHELC RPEAVEAEAT LRAITIASAV 

       250        260        270        280        290        300 
NCPLYVVHVM SKSAAKVVAD ARRAGNVVYG EPIAAGLGTD GRQYWSEEWS HAAHHVMGPP 

       310        320        330        340        350        360 
LRPDPLTPGF LMDLLANGDL TTTGSDNCTF NTCQKALGKD DFTKIPNGVN GVEDRMSVIW 

       370        380        390        400        410        420 
EKGVHSGKMD ENRFVAVTST NAAKIFNLYP KKGRIAVGSD ADIVIWDPEA TRRISAKTHH 

       430        440        450        460        470        480 
QAVNFNIFEG MVCHGVPLVT ISRGRVVYEA GVFNVTAGHG KFIPRQPFAE YIYKRIKQRD 

       490        500        510 
QTCTPVPVKR APYKGEVTTL KARETKEDDT AGTRMQGHS 

« Hide

References

« Hide 'large scale' references
[1]"Molecular characterization of CRMP5, a novel member of the collapsin response mediator protein family."
Fukada M., Watakabe I., Yuasa-Kawada J., Kawachi H., Kuroiwa A., Matsuda Y., Noda M.
J. Biol. Chem. 275:37957-37965(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: Swiss Webster / NIH.
Tissue: Embryo.
[2]"Molecular cloning, nucleotide sequencing, characterization and overexpression of dihydropyrimidinase from mouse liver."
Chang C.J., Huang C.J., Yang Y.S., Wu T.K.
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Liver.
[3]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Liver and Lung.
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
Tissue: Liver.
[5]"SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: SUCCINYLATION [LARGE SCALE ANALYSIS] AT LYS-256, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Liver.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF249296 mRNA. Translation: AAG37999.1.
AF227731 mRNA. Translation: AAK00644.1.
AK004822 mRNA. Translation: BAB23593.1.
AK004899 mRNA. Translation: BAB23654.1.
BC037086 mRNA. Translation: AAH37086.1.
CCDSCCDS27445.1.
RefSeqNP_001157938.1. NM_001164466.1.
NP_073559.3. NM_022722.3.
UniGeneMm.275974.

3D structure databases

ProteinModelPortalQ9EQF5.
SMRQ9EQF5. Positions 6-493.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid211101. 1 interaction.
IntActQ9EQF5. 1 interaction.
MINTMINT-1869933.

Protein family/group databases

MEROPSM38.973.

PTM databases

PhosphoSiteQ9EQF5.

Proteomic databases

MaxQBQ9EQF5.
PaxDbQ9EQF5.
PRIDEQ9EQF5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000022915; ENSMUSP00000022915; ENSMUSG00000022304.
ENSMUST00000110306; ENSMUSP00000105935; ENSMUSG00000022304.
GeneID64705.
KEGGmmu:64705.
UCSCuc007vok.2. mouse.

Organism-specific databases

CTD1807.
MGIMGI:1928679. Dpys.

Phylogenomic databases

eggNOGCOG0044.
GeneTreeENSGT00740000115468.
HOGENOMHOG000219145.
HOVERGENHBG000806.
InParanoidQ9EQF5.
KOK01464.
OMAAVDYNIF.
OrthoDBEOG7SJD48.
PhylomeDBQ9EQF5.
TreeFamTF314706.

Enzyme and pathway databases

BRENDA3.5.2.2. 3474.

Gene expression databases

ArrayExpressQ9EQF5.
BgeeQ9EQF5.
CleanExMM_DPYS.
GenevestigatorQ9EQF5.

Family and domain databases

Gene3D2.30.40.10. 2 hits.
InterProIPR006680. Amidohydro_1.
IPR011778. Hydantoinase/dihydroPyrase.
IPR011059. Metal-dep_hydrolase_composite.
[Graphical view]
PfamPF01979. Amidohydro_1. 1 hit.
[Graphical view]
SUPFAMSSF51338. SSF51338. 2 hits.
TIGRFAMsTIGR02033. D-hydantoinase. 1 hit.
ProtoNetSearch...

Other

NextBio320175.
PROQ9EQF5.
SOURCESearch...

Entry information

Entry nameDPYS_MOUSE
AccessionPrimary (citable) accession number: Q9EQF5
Secondary accession number(s): Q99PP1, Q9DBK3, Q9DBP7
Entry history
Integrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: June 6, 2002
Last modified: July 9, 2014
This is version 106 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot