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Protein

Ubiquitin-like protein 5

Gene

Ubl5

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ubl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Ubiquitin-like protein 5
Gene namesi
Name:Ubl5
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 9

Organism-specific databases

MGIiMGI:1913427. Ubl5.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7373Ubiquitin-like protein 5PRO_0000114868Add
BLAST

Proteomic databases

EPDiQ9EPV8.
MaxQBiQ9EPV8.
PaxDbiQ9EPV8.
PRIDEiQ9EPV8.

PTM databases

iPTMnetiQ9EPV8.
PhosphoSiteiQ9EPV8.

Expressioni

Gene expression databases

BgeeiQ9EPV8.
CleanExiMM_UBL5.
ExpressionAtlasiQ9EPV8. baseline and differential.
GenevisibleiQ9EPV8. MM.

Interactioni

Subunit structurei

Interacts with CLK1, CLK3 and CLK4.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000123971.

Structurei

Secondary structure

73
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi1 – 77Combined sources
Beta strandi9 – 124Combined sources
Beta strandi14 – 196Combined sources
Helixi24 – 3512Combined sources
Helixi39 – 413Combined sources
Beta strandi43 – 464Combined sources
Helixi57 – 604Combined sources
Beta strandi66 – 716Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UH6NMR-A1-73[»]
ProteinModelPortaliQ9EPV8.
SMRiQ9EPV8. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9EPV8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 7373Ubiquitin-likeAdd
BLAST

Sequence similaritiesi

Contains 1 ubiquitin-like domain.Curated

Phylogenomic databases

eggNOGiKOG3493. Eukaryota.
ENOG4111UT0. LUCA.
GeneTreeiENSGT00390000001945.
HOGENOMiHOG000234933.
HOVERGENiHBG055994.
InParanoidiQ9EPV8.
OrthoDBiEOG72ZCHN.
PhylomeDBiQ9EPV8.
TreeFamiTF318874.

Family and domain databases

InterProiIPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9EPV8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIEVVCNDRL GKKVRVKCNT DDTIGDLKKL IAAQTGTRWN KIVLKKWYTI
60 70
FKDHVSLGDY EIHDGMNLEL YYQ
Length:73
Mass (Da):8,547
Last modified:March 1, 2001 - v1
Checksum:iD68BC941536AA39F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002730 mRNA. Translation: BAB22312.1.
AK003992 mRNA. Translation: BAB23111.1.
AK007726 mRNA. Translation: BAB25215.1.
AK009854 mRNA. Translation: BAB26545.1.
AK012803 mRNA. Translation: BAB28481.1.
AK051149 mRNA. Translation: BAC34537.1.
BC028498 mRNA. Translation: AAH28498.1.
CCDSiCCDS52733.1.
RefSeqiNP_079677.1. NM_025401.3.
XP_006510607.1. XM_006510544.1.
UniGeneiMm.390165.

Genome annotation databases

EnsembliENSMUST00000129414; ENSMUSP00000123971; ENSMUSG00000084786.
ENSMUST00000160124; ENSMUSP00000125364; ENSMUSG00000084786.
ENSMUST00000160682; ENSMUSP00000124672; ENSMUSG00000084786.
ENSMUST00000162303; ENSMUSP00000124812; ENSMUSG00000084786.
GeneIDi66177.
UCSCiuc009ojc.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002730 mRNA. Translation: BAB22312.1.
AK003992 mRNA. Translation: BAB23111.1.
AK007726 mRNA. Translation: BAB25215.1.
AK009854 mRNA. Translation: BAB26545.1.
AK012803 mRNA. Translation: BAB28481.1.
AK051149 mRNA. Translation: BAC34537.1.
BC028498 mRNA. Translation: AAH28498.1.
CCDSiCCDS52733.1.
RefSeqiNP_079677.1. NM_025401.3.
XP_006510607.1. XM_006510544.1.
UniGeneiMm.390165.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UH6NMR-A1-73[»]
ProteinModelPortaliQ9EPV8.
SMRiQ9EPV8. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000123971.

PTM databases

iPTMnetiQ9EPV8.
PhosphoSiteiQ9EPV8.

Proteomic databases

EPDiQ9EPV8.
MaxQBiQ9EPV8.
PaxDbiQ9EPV8.
PRIDEiQ9EPV8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000129414; ENSMUSP00000123971; ENSMUSG00000084786.
ENSMUST00000160124; ENSMUSP00000125364; ENSMUSG00000084786.
ENSMUST00000160682; ENSMUSP00000124672; ENSMUSG00000084786.
ENSMUST00000162303; ENSMUSP00000124812; ENSMUSG00000084786.
GeneIDi66177.
UCSCiuc009ojc.1. mouse.

Organism-specific databases

CTDi59286.
MGIiMGI:1913427. Ubl5.

Phylogenomic databases

eggNOGiKOG3493. Eukaryota.
ENOG4111UT0. LUCA.
GeneTreeiENSGT00390000001945.
HOGENOMiHOG000234933.
HOVERGENiHBG055994.
InParanoidiQ9EPV8.
OrthoDBiEOG72ZCHN.
PhylomeDBiQ9EPV8.
TreeFamiTF318874.

Miscellaneous databases

EvolutionaryTraceiQ9EPV8.
NextBioi320870.
PROiQ9EPV8.
SOURCEiSearch...

Gene expression databases

BgeeiQ9EPV8.
CleanExiMM_UBL5.
ExpressionAtlasiQ9EPV8. baseline and differential.
GenevisibleiQ9EPV8. MM.

Family and domain databases

InterProiIPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Kidney, Pancreas, Spinal ganglion and Tongue.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Mammary gland.
  3. "Solution structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06."
    RIKEN structural genomics initiative (RSGI)
    Submitted (DEC-2003) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 1-73.

Entry informationi

Entry nameiUBL5_MOUSE
AccessioniPrimary (citable) accession number: Q9EPV8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2004
Last sequence update: March 1, 2001
Last modified: May 11, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.