Q9DGJ4 (Q9DGJ4_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Odc1 protein EMBL AAH47796.1

Submitted name:
Ornithine decarboxylase EMBL AAG01031.1
Submitted name:
Ornithine decarboxylase 1 EMBL AAH63932.1
Submitted name:
Uncharacterized protein Ensembl ENSDARP00000026811 Ensembl ENSDARP00000124918

Gene names

Name:

odc1 EMBL AAH47796.1 Ensembl ENSDARP00000026811 Ensembl ENSDARP00000124918 ZFIN ZDB-GENE-010816-1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. RuleBase RU003737

Ontologies

Keywords
Biological process	Polyamine biosynthesis RuleBase RU003739
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	eye photoreceptor cell development Inferred from mutant phenotype PubMed 15716491. Source: ZFIN polyamine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9DGJ4 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: 4B62DEAE5D51038A	FASTA	461	50,789
	10 20 30 40 50 60 MTACTGSDFD FAFLEEGFCA RDIVEQKINE SSLSDDKDAF YVADLGDVLK KHLRWLRVLP 70 80 90 100 110 120 RITPFYAVKC NDSRAVVTTL ASLGAGFDCA SKTEIQIVQS VGVDPSRIIY ANPCKQVSQI 130 140 150 160 170 180 KYASAHGVQM MTFDSEVELM KVARSHENAK LVLRIATDDS KAVCRLSVKF GATLKSSRLL 190 200 210 220 230 240 LERAKELGLD VIGVSFHVGS GCTDPETYSQ AISDARYVFD IGAELGYNMS LLDIGGGFPG 250 260 270 280 290 300 SEDTKLKFEE IAAVINPALD KYFPVDSGVR IIAEPGRYYV ASAYTLAVNI IAKKVIMKEQ 310 320 330 340 350 360 SASDEEEDVS NDRTLMYYVN DGVYGSFNCI LYDHAHVLPT LHKKPKPDER MYPCSIWGPT 370 380 390 400 410 420 CDGLDRIVEQ CSLPDMQVGD WLLFENMGAY TVAASSTFNG FQKPDIYYIM SRTAWQCMQQ 430 440 450 460 IRAQGIPALP LEEPSAGNVP SHCGRESSLD VPAKPCPTQV L

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genes and Development in the Biology Curriculum." Gill R.L., Fontana M.J., Campbell M.A., Warren J.T. Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Regulation of ornithine decarboxylase by antizymes and antizyme inhibitor in zebrafish (Danio rerio)." Hascilowicz T., Murai N., Matsufuji S., Murakami Y. Biochim. Biophys. Acta 1578:21-28(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: AB EMBL AAH47796.1. Tissue: Whole body EMBL AAH47796.1.
[4]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole EMBL AAH63932.1.
[5]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: AB EMBL AAH97034.1. Tissue: Whole body EMBL AAH97034.1.
[6]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000026811 Ensembl ENSDARP00000124918.
[7]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000026811 Ensembl ENSDARP00000124918.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU638706 Genomic DNA. No translation available. AF290981 mRNA. Translation: AAG01031.1. BC047796 mRNA. Translation: AAH47796.1. BC063932 mRNA. Translation: AAH63932.1. BC097034 mRNA. Translation: AAH97034.1. AB069857 mRNA. Translation: BAB84694.1.
IPI	IPI00488751.
RefSeq	NP_571876.1. NM_131801.2.
UniGene	Dr.78653.
3D structure databases
HSSP	HSSP built from PDB template 7ODC based on UniProtKB P00860.
SMR	Q9DGJ4. Positions 8-422.
ModBase	Search...
Protein-protein interaction databases
STRING	7955.ENSDARP00000026811.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000017510; ENSDARP00000026811; ENSDARG00000007377. ENSDART00000149039; ENSDARP00000124918; ENSDARG00000007377.
GeneID	114426.
KEGG	dre:114426.
Organism-specific databases
CTD	4953.
ZFIN	ZDB-GENE-010816-1. odc1.
Phylogenomic databases
eggNOG	COG0019.
GeneTree	ENSGT00390000011560.
HOGENOM	HOG000274133.
HOVERGEN	HBG005456.
KO	K01581.
OMA	DVLYEKN.
OrthoDB	EOG4ZGPC6.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
InterPro	IPR009006. Ala_racemase/Decarboxylase_C. IPR022643. De-COase2_C. IPR022657. De-COase2_CS. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. IPR002433. Orn_de-COase. [Graphical view]
Pfam	PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view]
PRINTS	PR01179. ODADCRBXLASE. PR01182. ORNDCRBXLASE.
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
PROSITE	PS00878. ODR_DC_2_1. 1 hit. PS00879. ODR_DC_2_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20796914.

Entry information

Entry name

Q9DGJ4_DANRE

Accession

Primary (citable) accession number: Q9DGJ4

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2001
Last modified:	April 3, 2013
This is version 82 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)