Q9DF72 (Q9DF72_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
HER-1 protein EMBL AAG24397.1

Gene names

Name:	her1 ZFIN ZDB-GENE-980526-125
Synonyms:	her-1 EMBL AAG24397.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAG24397.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	328 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 Orange domain. SAAS SAAS003650 Contains 1 bHLH (basic helix-loop-helix) domain. SAAS SAAS003650 Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS003650
Cellular component	Nucleus SAAS SAAS003650
Gene Ontology (GO)
Biological_process	negative regulation of transcription, DNA-dependent Inferred from direct assay PubMed 15905406. Source: ZFIN somite specification Inferred from mutant phenotype PubMed 22723933. Source: ZFIN transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	transcription factor complex Inferred by curator PubMed 15905406. Source: ZFIN
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9DF72 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: 1D55DE9D54DC6339	FASTA	328	36,633
	10 20 30 40 50 60 MVTPKMASRR PTKRILKPVI EKKRRDRINQ RLEELRTLLL DNTLDSRLQN PKLEKAEILE 70 80 90 100 110 120 LAVEYIRTKT ATARDQGDSS KDTHDPKPPP LLSRRPQMPC ASIPESIQTH TLPSNPIYKA 130 140 150 160 170 180 GFKECISRLA SFIDCVEPSQ RDSFVQGLCH HLDSYSSALP HGRVSSNPTH HPWIPNPELS 190 200 210 220 230 240 CRTDVQSIGH MRANPEPYSY ANSLYPKSFM HLHPTGQHPY LSPPYSISPP PSPGFSSSSP 250 260 270 280 290 300 PFSSSPTYLS VPCQFPFPPS ISPHSTDSSS SSTLSTVSLS TTSLPVVPGP HLQVSSPTRV 310 320 RFSGSVQSSQ PRTLRRALFH NQPLWRPW

References

[1]	"Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish." Gajewski M., Sieger D., Alt B., Leve C., Hans S., Wolff C., Rohr K.B., Tautz D. Development 130:4269-4278(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF292032 Genomic DNA. Translation: AAG24397.1.
IPI	IPI00499744.
UniGene	Dr.1462.
3D structure databases
ProteinModelPortal	Q9DF72.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
ZFIN	ZDB-GENE-980526-125. her1.
Phylogenomic databases
HOVERGEN	HBG098402.
InParanoid	Q9DF72.
Family and domain databases
Gene3D	4.10.280.10. 1 hit.
InterPro	IPR011598. bHLH_dom. IPR003650. Orange. [Graphical view]
Pfam	PF07527. Hairy_orange. 1 hit. PF00010. HLH. 1 hit. [Graphical view]
SMART	SM00353. HLH. 1 hit. [Graphical view]
SUPFAM	SSF47459. HLH_basic. 1 hit.
PROSITE	PS50888. BHLH. 1 hit. PS51054. ORANGE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9DF72_DANRE

Accession

Primary (citable) accession number: Q9DF72

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2001
Last modified:	May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)