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Q9DEU8

- Q9DEU8_DANRE

UniProt

Q9DEU8 - Q9DEU8_DANRE

Protein
Submitted name:

Transcription factor Her-8a

Gene

her8a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 1 (01 Mar 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Transcription factor Her-8aImported
    Gene namesi
    Name:her8aImported
    Synonyms:her-8aImported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

    Organism-specific databases

    ZFINiZDB-GENE-030131-2376. her8a.

    Subcellular locationi

    Nucleus SAAS annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliQ9DEU8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation
    Contains Orange domain.SAAS annotation
    Contains bHLH (basic helix-loop-helix) domain.SAAS annotation

    Phylogenomic databases

    HOVERGENiHBG107098.
    InParanoidiQ9DEU8.
    KOiK09087.
    PhylomeDBiQ9DEU8.

    Family and domain databases

    Gene3Di4.10.280.10. 1 hit.
    InterProiIPR011598. bHLH_dom.
    IPR003650. Orange.
    [Graphical view]
    PfamiPF07527. Hairy_orange. 1 hit.
    PF00010. HLH. 1 hit.
    [Graphical view]
    SMARTiSM00353. HLH. 1 hit.
    [Graphical view]
    SUPFAMiSSF47459. SSF47459. 1 hit.
    PROSITEiPS50888. BHLH. 1 hit.
    PS51054. ORANGE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9DEU8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTASNMGNGP EKNFNAKEER KLRKPLIEKK RRERINSSLE QLKGIMVDAY    50
    NLDQSKLEKA DVLEITVQHM ENLQRGHGQG GSNSPGTGFE SRQRYSSGYI 100
    QCMHEVHNLL LSCPGMDKTL GARLLNHLLK SLPHISTEPS GTSSAGTSSP 150
    LPLSPTQSPI NLPSSLQPHA LHLSPSPPSS PTHSLVRPRE QFSPPSSPSP 200
    QSPASLPPFF PGVDPSMWRP W 221
    Length:221
    Mass (Da):24,223
    Last modified:March 1, 2001 - v1
    Checksum:iAD5FB72CBDDED94C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY007990 mRNA. Translation: AAG23291.1.
    RefSeqiNP_955918.2. NM_199624.2.
    UniGeneiDr.74550.

    Genome annotation databases

    GeneIDi323656.
    KEGGidre:323656.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY007990 mRNA. Translation: AAG23291.1 .
    RefSeqi NP_955918.2. NM_199624.2.
    UniGenei Dr.74550.

    3D structure databases

    ProteinModelPortali Q9DEU8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 323656.
    KEGGi dre:323656.

    Organism-specific databases

    CTDi 323656.
    ZFINi ZDB-GENE-030131-2376. her8a.

    Phylogenomic databases

    HOVERGENi HBG107098.
    InParanoidi Q9DEU8.
    KOi K09087.
    PhylomeDBi Q9DEU8.

    Miscellaneous databases

    NextBioi 20808367.

    Family and domain databases

    Gene3Di 4.10.280.10. 1 hit.
    InterProi IPR011598. bHLH_dom.
    IPR003650. Orange.
    [Graphical view ]
    Pfami PF07527. Hairy_orange. 1 hit.
    PF00010. HLH. 1 hit.
    [Graphical view ]
    SMARTi SM00353. HLH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47459. SSF47459. 1 hit.
    PROSITEi PS50888. BHLH. 1 hit.
    PS51054. ORANGE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Leve C., Gajewski M., Tautz D.
      Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Comparative analysis of her genes during fish somitogenesis suggests a mouse/chick-like mode of oscillation in medaka."
      Gajewski M., Elmasri H., Girschick M., Sieger D., Winkler C.
      Dev. Genes Evol. 216:315-332(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ9DEU8_DANRE
    AccessioniPrimary (citable) accession number: Q9DEU8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2001
    Last sequence update: March 1, 2001
    Last modified: October 1, 2014
    This is version 82 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)