Q9DEU8 (Q9DEU8_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcription factor Her-8a EMBL AAG23291.1

Gene names

Name:	her8a ZFIN ZDB-GENE-030131-2376
Synonyms:	her-8a EMBL AAG23291.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAG23291.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	221 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 Orange domain. SAAS SAAS003650 Contains 1 bHLH (basic helix-loop-helix) domain. SAAS SAAS003650 Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS003650
Cellular component	Nucleus SAAS SAAS003650
Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9DEU8 [UniParc]. Last modified March 1, 2001. Version 1. Checksum: AD5FB72CBDDED94C	FASTA	221	24,223
	10 20 30 40 50 60 MTASNMGNGP EKNFNAKEER KLRKPLIEKK RRERINSSLE QLKGIMVDAY NLDQSKLEKA 70 80 90 100 110 120 DVLEITVQHM ENLQRGHGQG GSNSPGTGFE SRQRYSSGYI QCMHEVHNLL LSCPGMDKTL 130 140 150 160 170 180 GARLLNHLLK SLPHISTEPS GTSSAGTSSP LPLSPTQSPI NLPSSLQPHA LHLSPSPPSS 190 200 210 220 PTHSLVRPRE QFSPPSSPSP QSPASLPPFF PGVDPSMWRP W

References

[1]	Leve C., Gajewski M., Tautz D. Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Comparative analysis of her genes during fish somitogenesis suggests a mouse/chick-like mode of oscillation in medaka." Gajewski M., Elmasri H., Girschick M., Sieger D., Winkler C. Dev. Genes Evol. 216:315-332(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY007990 mRNA. Translation: AAG23291.1.
IPI	IPI00487719.
RefSeq	NP_955918.2. NM_199624.2.
UniGene	Dr.74550.
3D structure databases
ProteinModelPortal	Q9DEU8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	323656.
KEGG	dre:323656.
Organism-specific databases
CTD	323656.
ZFIN	ZDB-GENE-030131-2376. her8a.
Phylogenomic databases
HOVERGEN	HBG107098.
InParanoid	Q9DEU8.
Family and domain databases
Gene3D	4.10.280.10. 1 hit.
InterPro	IPR011598. bHLH_dom. IPR003650. Orange. [Graphical view]
Pfam	PF07527. Hairy_orange. 1 hit. PF00010. HLH. 1 hit. [Graphical view]
SMART	SM00353. HLH. 1 hit. [Graphical view]
SUPFAM	SSF47459. HLH_basic. 1 hit.
PROSITE	PS50888. BHLH. 1 hit. PS51054. ORANGE. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20808367.

Entry information

Entry name

Q9DEU8_DANRE

Accession

Primary (citable) accession number: Q9DEU8

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2001
Last sequence update:	March 1, 2001
Last modified:	May 1, 2013
This is version 74 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)