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Protein
Submitted name:

Transcription factor Her-8a

Gene

her8a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor Her-8aImported
Gene namesi
Name:her8aImported
Synonyms:her-8aImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-030131-2376. her8a.

Subcellular locationi

  1. Nucleus SAAS annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ9DEU8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation
Contains Orange domain.SAAS annotation
Contains bHLH (basic helix-loop-helix) domain.SAAS annotation

Phylogenomic databases

HOVERGENiHBG107098.
KOiK09087.
PhylomeDBiQ9DEU8.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
IPR003650. Orange.
[Graphical view]
PfamiPF07527. Hairy_orange. 1 hit.
PF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
PS51054. ORANGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9DEU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTASNMGNGP EKNFNAKEER KLRKPLIEKK RRERINSSLE QLKGIMVDAY
60 70 80 90 100
NLDQSKLEKA DVLEITVQHM ENLQRGHGQG GSNSPGTGFE SRQRYSSGYI
110 120 130 140 150
QCMHEVHNLL LSCPGMDKTL GARLLNHLLK SLPHISTEPS GTSSAGTSSP
160 170 180 190 200
LPLSPTQSPI NLPSSLQPHA LHLSPSPPSS PTHSLVRPRE QFSPPSSPSP
210 220
QSPASLPPFF PGVDPSMWRP W
Length:221
Mass (Da):24,223
Last modified:March 1, 2001 - v1
Checksum:iAD5FB72CBDDED94C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY007990 mRNA. Translation: AAG23291.1.
RefSeqiNP_955918.2. NM_199624.2.
UniGeneiDr.74550.

Genome annotation databases

GeneIDi323656.
KEGGidre:323656.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY007990 mRNA. Translation: AAG23291.1.
RefSeqiNP_955918.2. NM_199624.2.
UniGeneiDr.74550.

3D structure databases

ProteinModelPortaliQ9DEU8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi323656.
KEGGidre:323656.

Organism-specific databases

CTDi323656.
ZFINiZDB-GENE-030131-2376. her8a.

Phylogenomic databases

HOVERGENiHBG107098.
KOiK09087.
PhylomeDBiQ9DEU8.

Miscellaneous databases

NextBioi20808367.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
IPR003650. Orange.
[Graphical view]
PfamiPF07527. Hairy_orange. 1 hit.
PF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
PS51054. ORANGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Leve C., Gajewski M., Tautz D.
    Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Comparative analysis of her genes during fish somitogenesis suggests a mouse/chick-like mode of oscillation in medaka."
    Gajewski M., Elmasri H., Girschick M., Sieger D., Winkler C.
    Dev. Genes Evol. 216:315-332(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9DEU8_DANRE
AccessioniPrimary (citable) accession number: Q9DEU8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: October 29, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.