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Q9DEU8 (Q9DEU8_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length221 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity SAAS SAAS003650.

Sequence similarities

Contains 1 bHLH (basic helix-loop-helix) domain.

Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Contains Orange domain. SAAS SAAS003650

Contains bHLH (basic helix-loop-helix) domain. SAAS SAAS003650

Ontologies

Keywords
   Biological processTranscription
Transcription regulation SAAS SAAS003650
   Cellular componentNucleus SAAS SAAS003650
Gene Ontology (GO)
   Biological_processregulation of transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9DEU8 [UniParc].

Last modified March 1, 2001. Version 1.
Checksum: AD5FB72CBDDED94C

FASTA22124,223
        10         20         30         40         50         60 
MTASNMGNGP EKNFNAKEER KLRKPLIEKK RRERINSSLE QLKGIMVDAY NLDQSKLEKA 

        70         80         90        100        110        120 
DVLEITVQHM ENLQRGHGQG GSNSPGTGFE SRQRYSSGYI QCMHEVHNLL LSCPGMDKTL 

       130        140        150        160        170        180 
GARLLNHLLK SLPHISTEPS GTSSAGTSSP LPLSPTQSPI NLPSSLQPHA LHLSPSPPSS 

       190        200        210        220 
PTHSLVRPRE QFSPPSSPSP QSPASLPPFF PGVDPSMWRP W 

« Hide

References

[1]Leve C., Gajewski M., Tautz D.
Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Comparative analysis of her genes during fish somitogenesis suggests a mouse/chick-like mode of oscillation in medaka."
Gajewski M., Elmasri H., Girschick M., Sieger D., Winkler C.
Dev. Genes Evol. 216:315-332(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY007990 mRNA. Translation: AAG23291.1.
RefSeqNP_955918.2. NM_199624.2.
UniGeneDr.74550.

3D structure databases

ProteinModelPortalQ9DEU8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID323656.
KEGGdre:323656.

Organism-specific databases

CTD323656.
ZFINZDB-GENE-030131-2376. her8a.

Phylogenomic databases

HOVERGENHBG107098.
InParanoidQ9DEU8.
KOK09087.

Family and domain databases

Gene3D4.10.280.10. 1 hit.
InterProIPR011598. bHLH_dom.
IPR003650. Orange.
[Graphical view]
PfamPF07527. Hairy_orange. 1 hit.
PF00010. HLH. 1 hit.
[Graphical view]
SMARTSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMSSF47459. SSF47459. 1 hit.
PROSITEPS50888. BHLH. 1 hit.
PS51054. ORANGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20808367.

Entry information

Entry nameQ9DEU8_DANRE
AccessionPrimary (citable) accession number: Q9DEU8
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2001
Last sequence update: March 1, 2001
Last modified: February 19, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)